Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_011639.1 Length=13196 Score E Sequences producing significant alignments: (Bits) Value seq1594 100 2e-17 seq1480 84.2 2e-12 >seq1594 Length=5600000 Score = 100 bits (110), Expect = 2e-17 Identities = 233/345 (68%), Gaps = 6/345 (2%) Strand=Plus/Plus Query 8413 GCTAAAGAAAGAGAAATGAAACGGATTGGAAGATTCTTCTCTTTAATGTCATGGGAACTC 8472 ||||||||||| ||||| || ||| || ||||||||| | | ||| |||||||| || Sbjct 3582706 GCTAAAGAAAGGGAAATCAAGGAGATGGGCAGATTCTTCGCAATGATGGCATGGGAATTC 3582765 Query 8473 AGAGAGTATTTTGTTTTTACTGAGTACCTTATTAAGGAATATTTTGTTCCTCTATTCCAT 8532 | |||| || ||| | || ||| |||| || ||| | | ||| || | || ||| Sbjct 3582766 CGGGAGTTCTTCGTTGTCACCGAGCACCTAATCAAGACCCACTATGTGCCCTTGTTTCAT 3582825 Query 8533 GGATTAACTATGGCTGATGATCTACAATCTGTTATAAAGAAGATGTTAGAAAATTCTCAA 8592 || |||| ||||| || || | | | || || |||||||||||| || | | Sbjct 3582826 GGCCTAACCATGGCCGACGACCATAACACCGTGATCGAGAAGATGTTAGCTGCCTC-CGA 3582884 Query 8593 GGCCAAGGATCTA-ATGATTATGAGTATGTTTCAA-TA-GCAAATCATATTGATTATGAA 8649 || | ||| | | ||| | | | |||| || || || || | || || Sbjct 3582885 TGCACAAAATCCAGAGGATCCCAACCAGG--TCAACTATGCTAACCACCTAGACTACTCC 3582942 Query 8650 AAATGGAATAATCACCAAAGGAAAGAATCAAATTATTATGTTTTCAAAGTAATGGGCCAG 8709 |||||||| || || ||| | |||| | ||| | ||| ||||| || |||||||| Sbjct 3582943 AAATGGAACAACCATCAACGAGGAGAAGCCAATGACCCTGTGTTCAAGGTGATGGGCCAA 3583002 Query 8710 TGTTTCGGTCTTCCAAACTTATTTACACGAACACATGAATTCTTT 8754 | ||| ||||| ||||| || ||||| ||||| || || |||||| Sbjct 3583003 TTTTTGGGTCTCCCAAATTTGTTTACTCGAACTCACGAGTTCTTT 3583047 >seq1480 Length=8353993 Score = 84.2 bits (92), Expect = 2e-12 Identities = 234/355 (66%), Gaps = 7/355 (2%) Strand=Plus/Minus Query 8626 ATAGCAAATCATATTGATTATGAAAAATGGAATAATCACCAAAGGAAAGAATCAAATTAT 8685 || || ||||| || ||||||||||||||||| || ||||| | ||| | | || Sbjct 8252950 ATCGCTAATCACATCGATTATGAAAAATGGAACAACTTTCAAAGAAGAGAGGCCACTTCC 8252891 Query 8686 TATGTTTTCAAAGTAATGGGCCAGTGTTTCGGTCTTCCAAACTTATTTACACGAACACAT 8745 ||||||| ||| || || || | ||| || || || || |||| | || || ||| Sbjct 8252890 CCCGTTTTCACAGTGATTGGGCAATTTTTTGGACTACCTAATCTATTCGCCCGCACGCAT 8252831 Query 8746 GAATTCTTTGAACAAAGTTTGATTTATTATCCTCAAAGAGCTGATTTGATGCACGTTGAA 8805 |||||||||||| || || || ||||||| | | | ||| | || | || ||| Sbjct 8252830 GAATTCTTTGAAAAATCATTAATATATTATCGAGACCGTCCAGATCTAATAAAGGTCGAA 8252771 Query 8806 GGCGATACACTAAC-AAACTCGTCC--GCATCACTGGTGTGTTGGAATGGACAAAAAGGG 8862 | | | | || | | || | | || |||||||||||||||| || Sbjct 8252770 GATGGGGTGGTCGCGAATGTGGACCCGGAAAGGATGATGTGTTGGAATGGACAGGCCGGA 8252711 Query 8863 GGTTTAGAAGGATTAAGACAAAAAGGATGGTCAGTATTAAATTATTTAGTTATAGAAAGG 8922 || | ||||| || ||||||||||| ||| || | |||| || || || || ||| Sbjct 8252710 GGACTCGAAGGGTTGAGACAAAAAGGGTGGAGTGTTCTCAATTTATTGGTAATCGAGAGG 8252651 Query 8923 GAATCTAGGATAAGAAACACAAAGGT--TAAAGTATTAGCACAAGGGGATAATCA 8975 || || | || | ||||| ||||| | | | ||||| || || || ||||| Sbjct 8252650 GAGTCACGCATTCGTAACACTAAGGTGCTCACG--TTAGCTCAGGGTGACAATCA 8252598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 42107614439895