Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_012671.1 Length=10865 Score E Sequences producing significant alignments: (Bits) Value seq570 140 2e-29 seq65 136 3e-28 seq296 125 5e-25 >seq570 Length=1853759 Score = 140 bits (154), Expect = 2e-29 Identities = 262/381 (69%), Gaps = 8/381 (2%) Strand=Plus/Minus Query 9662 CCTTGCCGTGACCAACATGAAATCATTGGGAG-AGCTCGGATCCAGAAAGGAGGTGTGGT 9720 |||||| | || || ||||||| || || || ||| || |||||||||||||| | || Sbjct 12516 CCTTGCAGGCACGAAGATGAAATAATCGGCAGGAGCA-GGCTCCAGAAAGGAGGTCTCGT 12458 Query 9721 TGACATGTCAGCTGC---CGGGTGCTTGGCCAAAGCTCACGCTCAAATGTGGGGGTTGTA 9777 | | ||||| || || ||||||| || |||| |||||||||| | || Sbjct 12457 GAGCTT---AGCTGAGAGCGCCTGTATGGCCAAGGCCTACGCACAAATGTGGGCCCTATA 12401 Query 9778 CTACTTCCACCGGCGAGACCTGCGGCTAGGATTCGCTGCAATCGTGTCGGCTGTTCCCTC 9837 | ||| ||||| || || | | || | || ||| ||| || |||||| ||||||| Sbjct 12400 TTTCTTTCACCGTCGGGATCAGAGGTTGGGGTTCTGTGCTATAACGTCGGCGATTCCCTC 12341 Query 9838 GAATTGGGTTCCAACGGGCCGCGTCTCATGGTCTGTGCACCAGCATGCTGAGTGGATGAC 9897 ||||| |||| ||| || || ||||| | |||||| || |||||||||||| Sbjct 12340 TGATTGGTTTCCTGTGGGGCGAACATCTTGGTCCATCCACCAGAATCATGAGTGGATGAC 12281 Query 9898 AACACAAGACATGCTGGAGGTATGGAACACCGTTTGGATTGTGAACAACCCGTGGATGAG 9957 || | || ||||| || ||||| |||||||||| |||||||||||| | Sbjct 12280 CACTGATGATATGCTACGAGTGTGGAATGACGTTTGGATTAGCAACAACCCGTGGGTTGC 12221 Query 9958 GACCAAAGACCTTGTCAAAGCTTGGACGGACATCCCGTATTTACCTAAGTCAAAGGACAT 10017 ||| ||||| | |||| | ||| || |||||||| || | |||| | ||||| Sbjct 12220 GACTAAAGAGCCAGTCATGTCGTGGGATGAAATCCCGTACTTGCATAAGAAGCAAGACAT 12161 Query 10018 AGCGTGCGGCAGTTTGATTGG 10038 |||||| || ||| | || || Sbjct 12160 AGCGTGTGGTAGTCTCATAGG 12140 Score = 95.1 bits (104), Expect = 8e-16 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 8900 GGGTCTCGCATCATCTGGTACATGTGGTTGGGAAGTAGGTTCCTCGAGTATGAAGCTCTC 8959 ||||| || | || |||||||||||| | || | |||||||| || | ||||||||| Sbjct 258036 GGGTCGCGTACGATTTGGTACATGTGGCTAGGCTGCAGGTTCCTAGAATTTGAAGCTCTT 258095 Query 8960 GGGTTTCTAAATGAAGATCACTGGGTTGCACGCGAAAATTTTCCATGTGGTGTTGGAGGT 9019 || || || || | || ||||||||| ||||| || || || | || || || || Sbjct 258096 GGCTTCCTCAACGCTGACCACTGGGTTAGTCGCGAGAACTTCCCGGGAGGAGTAGGGGGA 258155 Query 9020 GTGGGAGTGAACTACTTCGGGTACTACCTAAAGGAAATCGCCCAAAAAGGG 9070 || || || |||||||| ||| | || | || || |||| ||||||||| Sbjct 258156 GTTGGGGTCAACTACTTTGGGAATTATTTGAAAGACATCG--CAAAAAGGG 258204 >seq65 Length=4361017 Score = 136 bits (150), Expect = 3e-28 Identities = 261/381 (69%), Gaps = 8/381 (2%) Strand=Plus/Minus Query 9662 CCTTGCCGTGACCAACATGAAATCATTGGGAG-AGCTCGGATCCAGAAAGGAGGTGTGGT 9720 |||||| | || || ||||||| || || || ||| || |||||||| ||||| | || Sbjct 2220083 CCTTGCAGGCACGAAGATGAAATAATCGGCAGGAGCA-GGCTCCAGAAAAGAGGTCTCGT 2220025 Query 9721 TGACATGTCAGCTGC---CGGGTGCTTGGCCAAAGCTCACGCTCAAATGTGGGGGTTGTA 9777 | | ||||| || ||| ||||||| || |||| |||||||||| | || Sbjct 2220024 GAGCTT---AGCTGAGAGCGCCTGCATGGCCAAGGCCTACGCACAAATGTGGGCCCTATA 2219968 Query 9778 CTACTTCCACCGGCGAGACCTGCGGCTAGGATTCGCTGCAATCGTGTCGGCTGTTCCCTC 9837 | ||| ||||| || || | | || | || ||| ||| || |||||| ||||||| Sbjct 2219967 TTTCTTTCACCGTCGGGATCAGAGGTTGGGGTTCTGTGCTATAACGTCGGCGATTCCCTC 2219908 Query 9838 GAATTGGGTTCCAACGGGCCGCGTCTCATGGTCTGTGCACCAGCATGCTGAGTGGATGAC 9897 ||||| |||| ||| || || ||||| | |||||| || |||||||||||| Sbjct 2219907 TGATTGGTTTCCTGTGGGGCGAACATCTTGGTCCATCCACCAGAATCATGAGTGGATGAC 2219848 Query 9898 AACACAAGACATGCTGGAGGTATGGAACACCGTTTGGATTGTGAACAACCCGTGGATGAG 9957 || | || ||||| || ||||| |||||||||| ||||||| |||| | Sbjct 2219847 CACTGATGATATGCTACGAGTGTGGAATGACGTTTGGATTAGCAACAACCTGTGGGTTGC 2219788 Query 9958 GACCAAAGACCTTGTCAAAGCTTGGACGGACATCCCGTATTTACCTAAGTCAAAGGACAT 10017 ||| ||||| | |||| | ||| || |||||||| || | |||| | ||||| Sbjct 2219787 GACTAAAGAGCCAGTCATGTCGTGGGATGAAATCCCGTACTTGCATAAGAAGCAAGACAT 2219728 Query 10018 AGCGTGCGGCAGTTTGATTGG 10038 |||||| || ||| | || || Sbjct 2219727 AGCGTGTGGTAGTCTCATAGG 2219707 >seq296 Length=5246318 Score = 125 bits (138), Expect = 5e-25 Identities = 228/332 (69%), Gaps = 4/332 (1%) Strand=Plus/Plus Query 8783 TTCTGGAGCTTGGTTGACCGAGAACGGGCGCTGCACCTGAGTGGCGATTGTGAACTTTGT 8842 ||||||| | |||| |||||| || || || || ||| || | || | | ||| Sbjct 840560 TTCTGGAATCTTGTTGGCCGAGAGCGTGCTCTACATCTGCAAGGGAAATGCAATATGTGT 840619 Query 8843 GTCTACAACACCATGGGAAAGAAAGAGAAGAAACCTTCATCGTT--TGGCGAGGCCCGTG 8900 |||| || || ||||| || ||||| ||||| || | ||| ||| ||||| | Sbjct 840620 CTCTATAATACTATGGGGAAAAAAGAAAAGAAGCCCGGA--GTTGCTGGTGAGGCAAAGG 840677 Query 8901 GGTCTCGCATCATCTGGTACATGTGGTTGGGAAGTAGGTTCCTCGAGTATGAAGCTCTCG 8960 | ||||| | |||||||| |||||| | || || || ||| | ||||| ||||| || | Sbjct 840678 GATCTCGGACTATCTGGTATATGTGGCTCGGGAGCAGATTCTTGGAGTACGAAGCGCTGG 840737 Query 8961 GGTTTCTAAATGAAGATCACTGGGTTGCACGCGAAAATTTTCCATGTGGTGTTGGAGGTG 9020 ||| || || | ||| |||||||| || || ||||| || | || ||||| |||| Sbjct 840738 CGTTCCTGAACGCAGACCACTGGGTCAGCCGTGAGAATTTCCCCGGAGGAGTTGGCGGTG 840797 Query 9021 TGGGAGTGAACTACTTCGGGTACTACCTAAAGGAAATCGCCCAAAAAGGGCAGTGGCTGA 9080 | || || ||||| || || | || || ||||| || || ||||| ||| || Sbjct 840798 TTGGCGTCAACTATTTTGGCAATTATCTCAAGGAGATTTCCTGCAAAGGAAAGTACCTCT 840857 Query 9081 TAGCTGACGATGTAGCCGGTTGGGACACTAAG 9112 | || || || | || ||||||||||| ||| Sbjct 840858 TTGCGGATGACATTGCTGGTTGGGACACCAAG 840889 Score = 107 bits (118), Expect = 1e-19 Identities = 212/314 (68%), Gaps = 0/314 (0%) Strand=Plus/Plus Query 7571 ATATTGAATTCTCTTGACAAGAACGCGTTTGATCAGTACAGGTCCCGAGGTGTCAATGAA 7630 || || ||| ||||||||||| |||| ||||| |||||| | | || |||||||| Sbjct 831845 ATGTTAAATGCTCTTGACAAGGACGCCTTTGAAAAGTACAAAGTCAGGGGAGTCAATGAG 831904 Query 7631 ACGGATAAGGGAGACTATGTTTCTCGAGGTGGCCTGAAGATGGACGAGTTGCTGAGGAAA 7690 || | || |||||||| ||||| || |||||||| |||| ||| | | || Sbjct 831905 ACTGGGCGTGGTGACTATGTGTCTCGCGGAGGCCTGAAATTGGATGAGATAATCCACAAG 831964 Query 7691 TATCAGTGGGAACCGAAAGGTGTTGCTGTTGATCTCGGATGCGGAAGGGGAGGTTGGAGT 7750 || |||||| || | ||| || || || |||||||||||| | || |||||||| Sbjct 831965 TACAAGTGGGCCCCTATAGGCCATGTGGTGGACCTCGGATGCGGACGCGGCGGTTGGAGC 832024 Query 7751 CAGCGTCTGGTGATGGACTCACGGATTAGCGCTGTCCACGGATTCACCCTTGGAGGTAAC 7810 || || ||| ||||| | | | | || || |||| |||| | || || Sbjct 832025 CAACGCGCGGTCATGGAAGAAACCGTGACGTCAGTGCAGGGATACACCATCGGTGGGGCG 832084 Query 7811 AACCGAGAGAACCCCCAGCCGTTCCGGACAAAAGGGCATAACCTAGCCACATTGAAAGCT 7870 | || ||||||||| ||||| || || | || |||||||| ||||||||| Sbjct 832085 GAAAAGGAAAACCCCCAGAGGTTCCTAACTCGCGGCTACAATCTAGCCACCTTGAAAGCT 832144 Query 7871 GGCGTCGACGTGTA 7884 || || ||||| || Sbjct 832145 GGAGTTGACGTTTA 832158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34651850729860