Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_013955.1 Length=15764 Score E Sequences producing significant alignments: (Bits) Value seq1594 111 2e-20 seq1480 89.7 5e-14 >seq1594 Length=5600000 Score = 111 bits (122), Expect = 2e-20 Identities = 223/330 (68%), Gaps = 8/330 (2%) Strand=Plus/Plus Query 11242 AAATGGAATAATCATCAAAGATATGCTTCAAATTGCCATGTGTTTAAAGTCATGGGACAA 11301 |||||||| || |||||| || | | ||| || |||||| || || ||||| ||| Sbjct 3582943 AAATGGAACAACCATCAACGAGGAGAAGCCAATGACCCTGTGTTCAAGGTGATGGGCCAA 3583002 Query 11302 TGTTTTGGTTTACCCAATCTGTTCCTGCGTACACATGAATTCTTTGAGAAAAGCTTGATC 11361 | ||| ||| | || ||| |||| || || || || |||||| ||| | ||||| Sbjct 3583003 TTTTTGGGTCTCCCAAATTTGTTTACTCGAACTCACGAGTTCTTTCGGAAGTCCCTGATC 3583062 Query 11362 TATTATGCCAATAGACCAGATTTGATGATGGTTCAA----GGAGATTCTCTCATTAATAG 11417 || || |||||||||| | |||| |||| || ||| | || || ||| Sbjct 3583063 TACTACAAAGATAGACCAGACCTCATGAGGGTTGAATCCGGGAAAGTC----ATAAATGC 3583118 Query 11418 AACAGAGCATATGGTATGCTGGGAAGGTCAAAAAGGAGGATTAGAAGGCCTTAGACAAAA 11477 |||||| ||||| || || ||| | || ||| ||| || |||| ||||| | ||||| Sbjct 3583119 AACAGAACATATCGTTTGTTGGAAGGGCCAAGCAGGCGGGCTAGAGGGCCTGCGCCAAAA 3583178 Query 11478 GGGATGGTCCGGACTTAATTTATTGGTGATTGAGCGTGAAGCAAAAATCCGGAACACAAA 11537 |||||| || | || | ||| || |||||| | || || |||| ||| || | Sbjct 3583179 AGGATGGAGCGTTGTGAACTACCTGGGCATCGAGCGTCAGGCCAAGATCCAGAATACCCA 3583238 Query 11538 GCTCAAAATTTTGGCACAAGGAGACAATCA 11567 |||| | |||| ||||||||||| || Sbjct 3583239 TATCAAGTGTCTGGCCCAAGGAGACAACCA 3583268 >seq1480 Length=8353993 Score = 89.7 bits (98), Expect = 5e-14 Identities = 237/360 (66%), Gaps = 3/360 (1%) Strand=Plus/Minus Query 11218 ATTGCCAATCATTTTGATTATGAAAAATGGAATAATCATCAAAGATATGCTTCAAATTGC 11277 || || ||||| | ||||||||||||||||| || ||||||| | | | || | Sbjct 8252950 ATCGCTAATCACATCGATTATGAAAAATGGAACAACTTTCAAAGAAGAGAGGCCACTTCC 8252891 Query 11278 CATGTGTTTAAAGTCATGGGACAATGTTTTGGTTTACCCAATCTGTTCCTGCGTACACAT 11337 | || || | ||| || || |||| |||||| |||| ||||| ||| || || ||| Sbjct 8252890 CCCGTTTTCACAGTGATTGGGCAATTTTTTGGACTACCTAATCTATTCGCCCGCACGCAT 8252831 Query 11338 GAATTCTTTGAGAAAAGCTTGATCTATTATGCCAATAGACCAGATTTGATGATGGTTCAA 11397 ||||||||||| ||| || || |||||| | | |||||| | || | ||| || Sbjct 8252830 GAATTCTTTGAAAAATCATTAATATATTATCGAGACCGTCCAGATCTAATAAAGGTCGAA 8252771 Query 11398 G--GAGATTCTCTCATTAATAGA-ACAGAGCATATGGTATGCTGGGAAGGTCAAAAAGGA 11454 | | | | || | | || | || ||| | || ||| | || || ||| Sbjct 8252770 GATGGGGTGGTCGCGAATGTGGACCCGGAAAGGATGATGTGTTGGAATGGACAGGCCGGA 8252711 Query 11455 GGATTAGAAGGCCTTAGACAAAAGGGATGGTCCGGACTTAATTTATTGGTGATTGAGCGT 11514 ||| | ||||| | |||||||| || ||| | || ||||||||||| || ||| | Sbjct 8252710 GGACTCGAAGGGTTGAGACAAAAAGGGTGGAGTGTTCTCAATTTATTGGTAATCGAGAGG 8252651 Query 11515 GAAGCAAAAATCCGGAACACAAAGCTCAAAATTTTGGCACAAGGAGACAATCAAGTTATT 11574 || || || || ||||| ||| | | || || || || |||||||| || ||| Sbjct 8252650 GAGTCACGCATTCGTAACACTAAGGTGCTCACGTTAGCTCAGGGTGACAATCAGGTCATT 8252591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 50324983075935