Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_017685.1 Length=14717 Score E Sequences producing significant alignments: (Bits) Value seq1594 138 1e-28 seq1480 114 1e-21 >seq1594 Length=5600000 Score = 138 bits (152), Expect = 1e-28 Identities = 414/626 (66%), Gaps = 20/626 (3%) Strand=Plus/Plus Query 9809 TCAATGATCATGGTTTGGATTGGGAAAAATTAGTAATAGGGTTGAAGGCTAAAGAAAGAG 9868 |||||||||| || | ||| ||| || |||| || | |||| |||||||||||| | Sbjct 3582659 TCAATGATCACGGGCTTGATCCGGAGCAACTAGTTATCGCCTTGAGGGCTAAAGAAAGGG 3582718 Query 9869 AATTAAAAATTGAT-GGCAGATTCTTCTCATTAATGTCATATGATATGAGAGATTATTTT 9927 || | || ||| |||||||||||| || | ||| ||| || | | || | || Sbjct 3582719 AAAT-CAAGGAGATGGGCAGATTCTTCGCAATGATGGCATGGGAATTCCGGGAGTTCTTC 3582777 Query 9928 GTTATAACGGAGTATCTGATaaaaaaaTACTATGTTCCATTATTCAAAGGATTAACAATG 9987 ||| | || ||| | || || || | ||||||| || || || | || |||| ||| Sbjct 3582778 GTTGTCACCGAGCACCTAATCAAGACCCACTATGTGCCCTTGTTTCATGGCCTAACCATG 3582837 Query 9988 GCTGATGACCAAAATACTGTTGTCaaaaaaaTGTTAAAAGTATCTAAAGGAC-AGGGCCT 10046 || || ||||| || || || || | || |||||| | || | | || | || Sbjct 3582838 GCCGACGACCATAACACCGTGATCGAGAAGATGTTAGCTGCCTCCGATGCACAAAATCCA 3582897 Query 10047 GATTGATTACAAAGAGAT-TACGATCGCTAATCATTTGGATTATGAGAAGTGGAATAACT 10105 || ||| ||| || | || || ||||| || | || || || ||||| ||| Sbjct 3582898 GA-GGATCCCAACCAGGTCAACTAT-GCTAACCACCTAGACTACTCCAAATGGAACAACC 3582955 Query 10106 ATCAAAGAAAAGAGTCCAATGGCCCTGTGTTCCGAGTCATGGGTCAATTTTTGGGCTTAC 10165 ||||| || ||| |||||| |||||||||| || ||||| ||||||||||| | | Sbjct 3582956 ATCAACGAGGAGAAGCCAATGACCCTGTGTTCAAGGTGATGGGCCAATTTTTGGGTCTCC 3583015 Query 10166 CTAATTTAATAGAAAGAACTCATGAGTTTTTTGAAAAAAGTCTTATTTATTACAATGGGA 10225 | ||||| | ||||||| ||||| ||| || || || || ||||| | | Sbjct 3583016 CAAATTTGTTTACTCGAACTCACGAGTTCTTTCGGAAGTCCCTGATCTACTACAAAGATA 3583075 Query 10226 GGCCTGACTTGATGACAG-TGCGT--GGTAAAGAAGTGATCTCAAAT---AAAGGGGAAG 10279 | || ||| | |||| | || | || |||| || |||| | || | Sbjct 3583076 GACCAGACCTCATGAGGGTTGAATCCGGGAAAG------TCATAAATGCAACAGAACATA 3583129 Query 10280 TTGTTTGTTGGGAGGGTCAAAAAGGAGGCTTAGAAGGATTGAGACAAAAAGGGTGGAGTG 10339 | ||||||||| |||| ||| ||| || |||| || || | |||||||| ||||| | Sbjct 3583130 TCGTTTGTTGGAAGGGCCAAGCAGGCGGGCTAGAGGGCCTGCGCCAAAAAGGATGGAGCG 3583189 Query 10340 TTCTCAATTGCCTAATGATCGAACGGGAATCAAAGATACGAAATACTCAAAT-AGGACTC 10398 || | || | ||| ||||| || | | ||||| | ||||| || || | | || Sbjct 3583190 TTGTGAACTACCTGGGCATCGAGCGTCAGGCCAAGATCCAGAATACCCATATCAAGTGTC 3583249 Query 10399 TTGGCCCAAGGAGACAATCAAGTAAT 10424 |||||||||||||||| || |||| Sbjct 3583250 -TGGCCCAAGGAGACAACCAGATAAT 3583274 >seq1480 Length=8353993 Score = 114 bits (126), Expect = 1e-21 Identities = 260/385 (68%), Gaps = 11/385 (3%) Strand=Plus/Minus Query 10066 ACGATCGCTAATCATTTGGATTATGAGAAGTGGAATAACTATCAAAGAAAAGAGTCCAAT 10125 || ||||||||||| | |||||||| || ||||| |||| |||||||| |||| ||| | Sbjct 8252953 ACTATCGCTAATCACATCGATTATGAAAAATGGAACAACTTTCAAAGAAGAGAGGCCACT 8252894 Query 10126 GGCCCTGTGTTCCGAGTCATGGGTCAATTTTTGGGCTTACCTAATTTAATAGAAAGAACT 10185 ||| || ||| ||| || || |||||||| || |||||||| || | | | || Sbjct 8252893 TCCCCCGTTTTCACAGTGATTGGGCAATTTTTTGGACTACCTAATCTATTCGCCCGCACG 8252834 Query 10186 CATGAGTTTTTTGAAAAAAGTCTTATTTATTACAATGGGAGGCCTGACTTGATGACAGTG 10245 ||||| || ||||||||| | || ||||| | | || || | || | || Sbjct 8252833 CATGAATTCTTTGAAAAATCATTAATATATTATCGAGACCGTCCAGATCTAAT-AAAGGT 8252775 Query 10246 CGTGGTAAAGAAGTGATCTCAAAT----AAAGGGGAAG--TTGTTTGTTGGGAGGGTCAA 10299 || | | | ||| || | ||| | || ||| | | |||||| | || || Sbjct 8252774 CGAAG--ATGGGGTGGTCGCGAATGTGGACCCGGAAAGGATGATGTGTTGGAATGGACAG 8252717 Query 10300 AAAGGAGGCTTAGAAGGATTGAGACAAAAAGGGTGGAGTGTTCTCAATTGCCTAATGATC 10359 ||||| | ||||| ||||||||||||||||||||||||||||||| | | ||| Sbjct 8252716 GCCGGAGGACTCGAAGGGTTGAGACAAAAAGGGTGGAGTGTTCTCAATTTATTGGTAATC 8252657 Query 10360 GAACGGGAATCAAAGATACGAAATACTCAAATAGGACTC-TTGGCCCAAGGAGACAATCA 10418 || |||| ||| || || || ||| || | | | || || || || |||||||| Sbjct 8252656 GAGAGGGAGTCACGCATTCGTAACACT-AAGGTGCTCACGTTAGCTCAGGGTGACAATCA 8252598 Query 10419 AGTAATTACTACTCACTATAAGACA 10443 || ||| ||| ||| ||||| Sbjct 8252597 GGTCATTTGCACTGTGTATCAGACA 8252573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 46974677405400