Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_020806.1 Length=11088 Score E Sequences producing significant alignments: (Bits) Value seq1107 158 9e-35 seq1774 154 1e-33 seq1594 100 2e-17 >seq1107 Length=3620151 Score = 158 bits (174), Expect = 9e-35 Identities = 368/551 (67%), Gaps = 8/551 (1%) Strand=Plus/Minus Query 6260 TGGTGATTGGGCTAAAAGGGAAGGAAAGAGAATTGAAGATAGCCGGGAGATTTTTCTCAC 6319 ||||||| | ||| || |||||| |||| | ||| ||||||||||| | Sbjct 2215046 TGGTGATCGCCCTACGAGCCAAGGAACGAGAGATCAAGGAGATGGGGAGATTTTTTGCCA 2214987 Query 6320 TAATGTCGTGGAAGCTGAGAGAATATTTTGTGATCACGGAATATCTAATTAAGACACACT 6379 | ||| ||||| |||| ||||| | ||||||| |||| ||| || | || || || |||| Sbjct 2214986 TGATGGCGTGGGAGCTTAGAGAGTTTTTTGTGGTCACAGAACATTTGATCAAAACCCACT 2214927 Query 6380 TTGTACCACTTTTCCACGGCTTGACAATGGCAGATGACATGACGGCTGTAATAAAGAAAA 6439 ||| ||| | |||||||| | || |||||||| ||| | | || ||| |||| | Sbjct 2214926 ATGTTCCATTGTTCCACGGGCTCACCATGGCAGACGACCACAATACAGTGATAGAGAAGA 2214867 Query 6440 TGTTGGAAAGTTCAAGTGGACAGGGTCTAAAAGATTATTCGGCAGTATGCATT--GCAAA 6497 || | | | |||| || ||| | |||| |||| ||| || || Sbjct 2214866 TGCTCGCAGCTTCAGATGCCCAGAACCCGGAAGACCCGAACCAAGTAA--ATTACGCGAA 2214809 Query 6498 CCACATTGACTATGAGAAATGGAACAACCATCAG--AGGAAACGGTCAAATGAACCAATT 6555 ||| |||| || || ||||| ||||| ||| |||| | | | || || || | Sbjct 2214808 TCACCTTGATTACTCAAAGTGGAATAACCACCAGCGAGGAGAGG--CGAACGACCCGGTG 2214751 Query 6556 TTTAAAGTCATGGGTCAATTCTTGGGGTTTCCCAACCTTATATCGAGGACTCATGAATTC 6615 |||| ||||||||||||||| ||||| | || ||||| | | |||| ||||| ||| Sbjct 2214750 TTTAGGGTCATGGGTCAATTCCTGGGGCTCCCGAACCTGTTCACTCGGACCCATGAGTTC 2214691 Query 6616 TTTGAGAAAAGTCTCATCTATTATAATGGAAGGCCTGATTTGATGAAGGTGCAAGATGGA 6675 || ||||| || ||||||| || | |||| || |||||| ||| || |||| Sbjct 2214690 TTCAAGAAATCCCTTGTCTATTACAAAGACCGGCCGGACCTGATGAGAGTGGAATCTGGA 2214631 Query 6676 AGACTTGTGAACACAACGAAGCAATTGGTTTGTTGGGAAGGACAGGCAGGCGGATTAGAG 6735 | | | || | || | | | ||||| ||||| || || || |||||| | || Sbjct 2214630 AAGGTCATCAATGCCACCGAAAACATCGTTTGCTGGGAGGGCCAAGCCGGCGGACTGGAA 2214571 Query 6736 GGGTTAAGACAGAAGGGATGGAGCATCTTAAACTTATTGGTTATTCAAAGGGAATCCAAG 6795 ||| || |||||||||||||||| | | |||| | | || ||||| || | ||| Sbjct 2214570 GGGCTACGACAGAAGGGATGGAGTGTGGTCAACTACCTTGGGATCGAAAGGCAAGCAAAG 2214511 Query 6796 ATTCGGAACAC 6806 || |||||||| Sbjct 2214510 ATCCGGAACAC 2214500 >seq1774 Length=2904822 Score = 154 bits (170), Expect = 1e-33 Identities = 367/551 (67%), Gaps = 8/551 (1%) Strand=Plus/Minus Query 6260 TGGTGATTGGGCTAAAAGGGAAGGAAAGAGAATTGAAGATAGCCGGGAGATTTTTCTCAC 6319 ||||||| | ||| || |||||| |||| | ||| ||||||||||| | Sbjct 1686538 TGGTGATCGCCCTACGAGCCAAGGAACGAGAGATCAAGGAGATGGGGAGATTTTTTGCCA 1686479 Query 6320 TAATGTCGTGGAAGCTGAGAGAATATTTTGTGATCACGGAATATCTAATTAAGACACACT 6379 | ||| ||||| |||| ||||| | ||||||| |||| ||| || | || || || |||| Sbjct 1686478 TGATGGCGTGGGAGCTTAGAGAGTTTTTTGTGGTCACAGAACATTTGATCAAAACCCACT 1686419 Query 6380 TTGTACCACTTTTCCACGGCTTGACAATGGCAGATGACATGACGGCTGTAATAAAGAAAA 6439 ||| ||| | |||||||| | || |||||||| ||| | | || ||| |||| | Sbjct 1686418 ATGTTCCATTGTTCCACGGGCTCACCATGGCAGACGACCACAATACAGTGATAGAGAAGA 1686359 Query 6440 TGTTGGAAAGTTCAAGTGGACAGGGTCTAAAAGATTATTCGGCAGTATGCATT--GCAAA 6497 || | | | |||| || ||| | |||| |||| ||| || || Sbjct 1686358 TGCTCGCAGCTTCAGATGCCCAGAACCCGGAAGACCCGAACCAAGTAA--ATTACGCGAA 1686301 Query 6498 CCACATTGACTATGAGAAATGGAACAACCATCAG--AGGAAACGGTCAAATGAACCAATT 6555 ||| | || || || ||||| ||||| ||| |||| | | | || || || | Sbjct 1686300 TCACCTGGATTACTCAAAGTGGAATAACCACCAGCGAGGAGAGG--CGAACGACCCGGTG 1686243 Query 6556 TTTAAAGTCATGGGTCAATTCTTGGGGTTTCCCAACCTTATATCGAGGACTCATGAATTC 6615 |||| ||||||||||||||| ||||| | || ||||| | | |||| ||||| ||| Sbjct 1686242 TTTAGGGTCATGGGTCAATTCCTGGGGCTCCCGAACCTGTTCACTCGGACCCATGAGTTC 1686183 Query 6616 TTTGAGAAAAGTCTCATCTATTATAATGGAAGGCCTGATTTGATGAAGGTGCAAGATGGA 6675 || ||||| || ||||||| || | |||| || |||||| ||| || |||| Sbjct 1686182 TTCAAGAAATCCCTTGTCTATTACAAAGACCGGCCGGACCTGATGAGAGTGGAATCTGGA 1686123 Query 6676 AGACTTGTGAACACAACGAAGCAATTGGTTTGTTGGGAAGGACAGGCAGGCGGATTAGAG 6735 | | | || | || | | | ||||| ||||| || || || |||||| | || Sbjct 1686122 AAGGTCATCAATGCCACCGAAAACATCGTTTGCTGGGAGGGCCAAGCCGGCGGACTGGAA 1686063 Query 6736 GGGTTAAGACAGAAGGGATGGAGCATCTTAAACTTATTGGTTATTCAAAGGGAATCCAAG 6795 ||| || |||||||||||||||| | | |||| | | || ||||| || | ||| Sbjct 1686062 GGGCTACGACAGAAGGGATGGAGTGTGGTCAACTACCTTGGGATCGAAAGGCAAGCAAAG 1686003 Query 6796 ATTCGGAACAC 6806 || |||||||| Sbjct 1686002 ATCCGGAACAC 1685992 >seq1594 Length=5600000 Score = 100 bits (110), Expect = 2e-17 Identities = 245/364 (67%), Gaps = 8/364 (2%) Strand=Plus/Plus Query 6492 TGCAAACCACATTGACTATGAGAAATGGAACAACCATCA--GAGGAAACGGTCAAATGAA 6549 ||| |||||| | ||||| ||||||||||||||||| ||||| | | | ||||| Sbjct 3582921 TGCTAACCACCTAGACTACTCCAAATGGAACAACCATCAACGAGGAGAAG--CCAATGAC 3582978 Query 6550 CCAATTTTTAAAGTCATGGGTCAATTCTTGGGGTTTCCCAACCTTATAT-CGAGGACTCA 6608 || | || || || ||||| ||||| || |||| |||||| || | | | | ||||| Sbjct 3582979 CCTGTGTTCAAGGTGATGGGCCAATT-TTTGGGTCTCCCAAATTTGTTTACTCGAACTCA 3583037 Query 6609 TGAATTCTTTGAGAAAAGTCTCATCTATTATAATGGAAGGCCTGATTTGATGAAGGTGCA 6668 || |||||| ||| || ||||| || || | || || || | |||| ||| | Sbjct 3583038 CGAGTTCTTTCGGAAGTCCCTGATCTACTACAAAGATAGACCAGACCTCATGAGGGTTGA 3583097 Query 6669 AGATGGAAGACTTGTGAACACAACGAAGCAATTGGTTTGTTGGGAAGGACAGGCAGGCGG 6728 | || | | | | || |||| | || | ||||||||| | || || |||||||| Sbjct 3583098 ATCCGGGAAAGTCATAAATGCAACAGAACATATCGTTTGTTGGAAGGGCCAAGCAGGCGG 3583157 Query 6729 ATTAGAGGGGTTAAGACAGAAGGGATGGAGCATCTTAAACTTATTGGTTATTCAAAGGGA 6788 ||||||| | | || || ||||||||| | | |||| ||| || | | | Sbjct 3583158 GCTAGAGGGCCTGCGCCAAAAAGGATGGAGCGTTGTGAACTACCTGGGCATCGAGCGTCA 3583217 Query 6789 ATCCAAGATTCGGAACACAGCAGTTAAAGT-CCTTGCACAAGGTGATAATCAAGTAATAT 6847 ||||||| | ||| || || | |||| || || ||||| || || || |||||| Sbjct 3583218 GGCCAAGATCCAGAATAC-CCATATCAAGTGTCTGGCCCAAGGAGACAACCAGATAATAT 3583276 Query 6848 GCAC 6851 |||| Sbjct 3583277 GCAC 3583280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35365431181680