Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_022755.1 Length=10692 Score E Sequences producing significant alignments: (Bits) Value seq1594 125 5e-25 seq1107 100 2e-17 seq1774 96.9 2e-16 seq1480 91.5 1e-14 >seq1594 Length=5600000 Score = 125 bits (138), Expect = 5e-25 Identities = 312/463 (67%), Gaps = 28/463 (6%) Strand=Plus/Plus Query 5992 TTCTTCTCTCTAATGTCTTGGAAATTAAGAGAATACTTCGTGATAACAGAGTATCTCATA 6051 |||||| | | ||| | ||| |||| | || | |||||| | || ||| | || || Sbjct 3582739 TTCTTCGCAATGATGGCATGGGAATTCCGGGAGTTCTTCGTTGTCACCGAGCACCTAATC 3582798 Query 6052 AAGACTCATTTTGTTCCTTTGTTTCACGGGCTCACCATGGCGGACGACC-TGACAGCTGT 6110 ||||| || | ||| || |||||||| || || |||||||| ||||||| | ||| | || Sbjct 3582799 AAGACCCACTATGTGCCCTTGTTTCATGGCCTAACCATGGCCGACGACCATAACACC-GT 3582857 Query 6111 TATGAAGAAAATGATGGAGTCATCTTCAGGACAAG-----GCGCCTCCGACTATGATGCC 6165 || |||| ||| | | | || | |||| | | ||| | | | | | Sbjct 3582858 GATCGAGAAGATGTTAGCTGCCTCCGATGCACAAAATCCAGAGGATCCCA--ACCAGGTC 3582915 Query 6166 ATTGCCATTGCGAACCATATTGACTATGAAAAATGGAATAACCATCAACGGAAAGAATCC 6225 | | ||| ||||| | ||||| |||||||| ||||||||||| |||| || Sbjct 3582916 AA---CTATGCTAACCACCTAGACTACTCCAAATGGAACAACCATCAACGAGGAGAAGCC 3582972 Query 6226 AATGGTCCTGTCTTCAGAGTCATGGGTCAGTTCCTAGGGTATCCAAATTTAATTTAC-CG 6284 |||| ||||| |||| || ||||| || || | |||| ||| || || ||||| || Sbjct 3582973 AATGACCCTGTGTTCAAGGTGATGGGCCAATT-TTTGGGTCTCCCAAATTTGTTTACTCG 3583031 Query 6285 GACGCATGAGTTTTTTGAGAATAGCCTCATATATTACAATAACAGACCCGACCTGATGAG 6344 || || ||||| ||| ||| ||| || || ||||| | ||||| ||||| ||||| Sbjct 3583032 AACTCACGAGTTCTTTCGGAAGTCCCTGATCTACTACAAAGATAGACCAGACCTCATGAG 3583091 Query 6345 AGTGGTGAATAATACCGTGGAGA---ACAGTT----CTGATCAAAGAGTCTGCTGGAATG 6397 || ||||| ||| ||| | | | | | || || | || || ||||| | Sbjct 3583092 GGT--TGAAT----CCG-GGAAAGTCATAAATGCAACAGAACATATCGTTTGTTGGAAGG 3583144 Query 6398 GTCAGGCAGGGGGGCTCGAAGGACTGCGGCAAAAAGGATGGAG 6440 | || ||||| ||||| || || ||||| |||||||||||||| Sbjct 3583145 GCCAAGCAGGCGGGCTAGAGGGCCTGCGCCAAAAAGGATGGAG 3583187 >seq1107 Length=3620151 Score = 100 bits (110), Expect = 2e-17 Identities = 229/337 (68%), Gaps = 12/337 (4%) Strand=Plus/Minus Query 6019 AGAGAATACTTCGTGATAACAGAGTATCTCATAAAGACTCATTTTGTTCCTTTGTTTCAC 6078 ||||| | || ||| | ||||| || | || || || || | |||||| ||||| ||| Sbjct 2214969 AGAGAGTTTTTTGTGGTCACAGAACATTTGATCAAAACCCACTATGTTCCATTGTTCCAC 2214910 Query 6079 GGGCTCACCATGGCGGACGACCTGACAGCTGTTATGAAGAAAATGATGGAGTCATCTTCA 6138 |||||||||||||| ||||||| | | || || |||| ||| | | || ||||| Sbjct 2214909 GGGCTCACCATGGCAGACGACCACAATACAGTGATAGAGAAGATGCTCG---CAGCTTCA 2214853 Query 6139 G--GACAAGGCGCCTCC-GACTATGATGCCATTGCCATT--GCGAACCATATTGACTATG 6193 | | | || || ||| | ||| ||| ||||| || |||| || Sbjct 2214852 GATGCCCAGAACCCGGAAGACCCGAA--CCAAGTAAATTACGCGAATCACCTTGATTACT 2214795 Query 6194 AAAAATGGAATAACCATCAACGGAAAGAATCCAATGGTCCTGTCTTCAGAGTCATGGGTC 6253 ||| ||||||||||| || || ||| | || | || || || || |||||||||| Sbjct 2214794 CAAAGTGGAATAACCACCAGCGAGGAGAGGCGAACGACCCGGTGTTTAGGGTCATGGGTC 2214735 Query 6254 AGTTCCTAGGGTATCCAAATTTAATTTAC-CGGACGCATGAGTTTTTTGAGAATAGCCTC 6312 | ||||| ||| || || | || || ||||| |||||||| || |||| ||| Sbjct 2214734 AATTCCTGGGGCTCCCGAACCTG-TTCACTCGGACCCATGAGTTCTTCAAGAAATCCCTT 2214676 Query 6313 ATATATTACAATAACAGACCCGACCTGATGAGAGTGG 6349 | |||||||| || | || |||||||||||||||| Sbjct 2214675 GTCTATTACAAAGACCGGCCGGACCTGATGAGAGTGG 2214639 >seq1774 Length=2904822 Score = 96.9 bits (106), Expect = 2e-16 Identities = 228/337 (68%), Gaps = 12/337 (4%) Strand=Plus/Minus Query 6019 AGAGAATACTTCGTGATAACAGAGTATCTCATAAAGACTCATTTTGTTCCTTTGTTTCAC 6078 ||||| | || ||| | ||||| || | || || || || | |||||| ||||| ||| Sbjct 1686461 AGAGAGTTTTTTGTGGTCACAGAACATTTGATCAAAACCCACTATGTTCCATTGTTCCAC 1686402 Query 6079 GGGCTCACCATGGCGGACGACCTGACAGCTGTTATGAAGAAAATGATGGAGTCATCTTCA 6138 |||||||||||||| ||||||| | | || || |||| ||| | | || ||||| Sbjct 1686401 GGGCTCACCATGGCAGACGACCACAATACAGTGATAGAGAAGATGCTCG---CAGCTTCA 1686345 Query 6139 G--GACAAGGCGCCTCC-GACTATGATGCCATTGCCATT--GCGAACCATATTGACTATG 6193 | | | || || ||| | ||| ||| ||||| || | || || Sbjct 1686344 GATGCCCAGAACCCGGAAGACCCGAA--CCAAGTAAATTACGCGAATCACCTGGATTACT 1686287 Query 6194 AAAAATGGAATAACCATCAACGGAAAGAATCCAATGGTCCTGTCTTCAGAGTCATGGGTC 6253 ||| ||||||||||| || || ||| | || | || || || || |||||||||| Sbjct 1686286 CAAAGTGGAATAACCACCAGCGAGGAGAGGCGAACGACCCGGTGTTTAGGGTCATGGGTC 1686227 Query 6254 AGTTCCTAGGGTATCCAAATTTAATTTAC-CGGACGCATGAGTTTTTTGAGAATAGCCTC 6312 | ||||| ||| || || | || || ||||| |||||||| || |||| ||| Sbjct 1686226 AATTCCTGGGGCTCCCGAACCTG-TTCACTCGGACCCATGAGTTCTTCAAGAAATCCCTT 1686168 Query 6313 ATATATTACAATAACAGACCCGACCTGATGAGAGTGG 6349 | |||||||| || | || |||||||||||||||| Sbjct 1686167 GTCTATTACAAAGACCGGCCGGACCTGATGAGAGTGG 1686131 >seq1480 Length=8353993 Score = 91.5 bits (100), Expect = 1e-14 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 6388 TGCTGGAATGGTCAGGCAGGGGGGCTCGAAGGACTGCGGCAAAAAGGATGGAGTATATTA 6447 || |||||||| ||||| || || |||||||| || | |||||||| |||||| | | Sbjct 8252731 TGTTGGAATGGACAGGCCGGAGGACTCGAAGGGTTGAGACAAAAAGGGTGGAGTGTTCTC 8252672 Query 6448 AATTTGCTGGTGATAGCTAGGGAATCTCAGATTAGAAACACCTCTGTCAAAACTCTGGCA 6507 ||||| |||| || | ||||| || | ||| | ||||| || || | || Sbjct 8252671 AATTTATTGGTAATCGAGAGGGAGTCACGCATTCGTAACACTAAGGTGCTCACGTTAGCT 8252612 Query 6508 CAGGGGGACAATCAGGTGATTTGCACTCAATATAAGACAA 6547 ||||| ||||||||||| ||||||||| ||| |||||| Sbjct 8252611 CAGGGTGACAATCAGGTCATTTGCACTGTGTATCAGACAA 8252572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34098265895040