Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_024299.2 Length=10878 Score E Sequences producing significant alignments: (Bits) Value seq570 176 3e-40 seq296 111 1e-20 seq1069 84.2 2e-12 seq1791 80.6 2e-11 >seq570 Length=1853759 Score = 176 bits (194), Expect = 3e-40 Identities = 364/534 (68%), Gaps = 11/534 (2%) Strand=Plus/Plus Query 8826 AACACAATGGGGAAGAAGGAGAAAAAACCCTCAGTGTG-TGGAGAGGCAAAAGGCTCACG 8884 || || ||||| || ||||| |||||| || | || |||||| || || || || || Sbjct 257984 AATACCATGGGCAAAAAGGAAAAAAAAACCGGGGGTTGCTGGAGAAGCTAAGGGGTCGCG 258043 Query 8885 CACGATTTGGTATATGTGGCTTGGATGCCGTTTCCTAGAATACGAGGCTTTAGGCTTTTT 8944 ||||||||||| |||||||| || ||| | |||||||||| || ||| | ||||| | Sbjct 258044 TACGATTTGGTACATGTGGCTAGGCTGCAGGTTCCTAGAATTTGAAGCTCTTGGCTTCCT 258103 Query 8945 GAACGAAGATCACTGGGTTTCTCGCGAGTACCTTCCATGTGGAGTGGGCGGAATAGGAGT 9004 |||| || ||||||||| ||||||| || | || | ||||| || ||| | || || Sbjct 258104 CAACGCTGACCACTGGGTTAGTCGCGAGAACTTCCCGGGAGGAGTAGGGGGAGTTGGGGT 258163 Query 9005 GAACTACTTCGGTTATTATCTGGAAGAAATCGCTAGGAAAGGACACTGGTTGGTGGCGGA 9064 |||||||| || ||||| || |||| ||||| | | ||| | | || | || || Sbjct 258164 CAACTACTTTGGGAATTATTTGAAAGACATCGCAAAAAGGGGAAAATTTTTATTCGCCGA 258223 Query 9065 TGACGTGGCAGGATGGGACACCCGAATTA---CGGAATCAGACCTGGAAGATG-AGCTGT 9120 |||| | || ||||||||||| || |||| | || ||| ||||| || | || Sbjct 258224 TGACATTGCTGGATGGGACACTCGTATTAGCTCTGA---AGATCTGGAGGACGAAGAAAC 258280 Query 9121 TCTTCCTGTTAGAGCTGGCCCARGATGATTACCATAGGAAGCTGATGTCATCCGTGTATA 9180 |||| || ||| |||| ||| || ||| | || || || || | Sbjct 258281 TCTT-CTAACGGAGTTGGCTATTGATCCTTTCCACCGTGCACTAATATCCGCCACCATGA 258339 Query 9181 AAATGGCCTACCGGAACATTGTGGCTCTATTCCCGCGAAACCACCCAAAGTACAGGAGTG 9240 | | || |||| |||||| || | | ||||| |||| ||| | || || | |||| Sbjct 258340 GACTCGCTTACCAGAACATCGTTGTCATGTTCCCACGAACCCATTCTAAATATGGCAGTG 258399 Query 9241 GGACGGTGCTGGATG-TGTTAACACGAACTGATCAAAGAGGCTCAGGGCAAGTAGTAACA 9299 | || ||| |||||| |||| || ||| || ||| | || || || ||||| || ||| Sbjct 258400 GAACTGTGATGGATGTTGTTGGCA-GAAGGGACCAACGCGGATCGGGCCAAGTCGTGACA 258458 Query 9300 TATGCGATGAACACGATTACAAATGCAAAAAATCAGGTTGGTAGAGTGTTGGAG 9353 || || | ||||| || || |||| ||| ||||||| | |||||||| Sbjct 258459 TACGCCCTAAACACCATAACCAATGGAAAGGTCCAGGTTGCCCGTATGTTGGAG 258512 >seq296 Length=5246318 Score = 111 bits (122), Expect = 1e-20 Identities = 183/264 (69%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 8823 TACAACACAATGGGGAAGAAGGAGAAAAAACCCTCAGTGTGTGGAGAGGCAAAAGGCTCA 8882 || || || |||||||| || || || || ||| ||| ||| |||||||| || || Sbjct 840623 TATAATACTATGGGGAAAAAAGAAAAGAAGCCCGGAGTTGCTGGTGAGGCAAAGGGATCT 840682 Query 8883 CGCACGATTTGGTATATGTGGCTTGGATGCCGTTTCCTAGAATACGAGGCTTTAGGCTTT 8942 || || || |||||||||||||| || || | ||| | || ||||| || | | || Sbjct 840683 CGGACTATCTGGTATATGTGGCTCGGGAGCAGATTCTTGGAGTACGAAGCGCTGGCGTTC 840742 Query 8943 TTGAACGAAGATCACTGGGTTTCTCGCGAGTACCTTCCATGTGGAGTGGGCGGAATAGGA 9002 |||||| ||| |||||||| || ||| | | || | ||||| ||||| | || Sbjct 840743 CTGAACGCAGACCACTGGGTCAGCCGTGAGAATTTCCCCGGAGGAGTTGGCGGTGTTGGC 840802 Query 9003 GTGAACTACTTCGGTTATTATCTGGAAGAAATCGCTAGGAAAGGACACTGGTTGGTGGCG 9062 || ||||| || || ||||||| | || || | | |||||| | | | | ||| Sbjct 840803 GTCAACTATTTTGGCAATTATCTCAAGGAGATTTCCTGCAAAGGAAAGTACCTCTTTGCG 840862 Query 9063 GATGACGTGGCAGGATGGGACACC 9086 |||||| | || || ||||||||| Sbjct 840863 GATGACATTGCTGGTTGGGACACC 840886 Score = 91.5 bits (100), Expect = 1e-14 Identities = 126/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 7572 GCTTTTGAAAAGTAC-AAGTCACGAGGAGTTGATGAAACGGAGAAGGGAGATTATGTCTC 7630 || |||||||||||| |||||| | ||||| |||| || | | || || ||||| || Sbjct 831869 GCCTTTGAAAAGTACAAAGTCA-GGGGAGTCAATGAGACTGGGCGTGGTGACTATGTGTC 831927 Query 7631 ACGAGGAGGCCTGAAACTGGACGAGATTATCAAGAGACACGGATGGGAACCTAAAGGACT 7690 || |||||||||||| |||| ||||| ||| | | || |||| |||| ||| | Sbjct 831928 TCGCGGAGGCCTGAAATTGGATGAGATAATCCACAAGTACAAGTGGGCCCCTATAGGCCA 831987 Query 7691 GGTGTATGATCTAGGATGTGGACGAGGAGGCTGGACCCAGCGGTTGGTCATGGA 7744 ||| || || ||||| ||||| || || |||| ||| || ||||||||| Sbjct 831988 TGTGGTGGACCTCGGATGCGGACGCGGCGGTTGGAGCCAACGCGCGGTCATGGA 832041 >seq1069 Length=10974945 Score = 84.2 bits (92), Expect = 2e-12 Identities = 136/194 (70%), Gaps = 5/194 (3%) Strand=Plus/Plus Query 9717 TGCCTGGCTAAAGCCCATGCCCAGATGTGGGCATTGTACTTCTTTCACCGACGTGACTTA 9776 ||| ||| ||||| | ||||| |||||||| ||||||| || || || |||||| | Sbjct 4625994 TGCATGGTAAAAGCATACGCCCAAATGTGGGCCCTGTACTTTTTCCATCGTCGTGACCTC 4626053 Query 9777 AGATTAGGATTTGCTGCCATAACCTCCATTGTGCCGAAGCACTGGGTGCCCACGGGAAGG 9836 | || || ||||||||||| || || |||||| | | ||| | || ||||| Sbjct 4626054 CGTTTGGGGTTTGCTGCCATCACATCTGCTGTGCCTAGTGATTGGTTTCCTGAGGGAAAA 4626113 Query 9837 GTGTCT--TGGTCAG---TGCACCAGAAAAAAGAGTGGATGACAACTAGAGACATGTTGG 9891 | ||| || || | ||||| || | ||||||||||||||| ||||||||| Sbjct 4626114 ATTTCTAGAGGGAAGAACTTCACCAAAACCATGAGTGGATGACAACTGATGACATGTTGC 4626173 Query 9892 AGGTTTGGAATGAT 9905 ||| ||||| ||| Sbjct 4626174 GGGTGTGGAACGAT 4626187 >seq1791 Length=5469670 Score = 80.6 bits (88), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 5/194 (3%) Strand=Plus/Minus Query 9717 TGCCTGGCTAAAGCCCATGCCCAGATGTGGGCATTGTACTTCTTTCACCGACGTGACTTA 9776 ||| ||| ||||| | ||||| |||||||| || |||| || || || |||||| | Sbjct 1196098 TGCATGGTAAAAGCATACGCCCAAATGTGGGCCCTGCACTTTTTCCATCGTCGTGACCTC 1196039 Query 9777 AGATTAGGATTTGCTGCCATAACCTCCATTGTGCCGAAGCACTGGGTGCCCACGGGAAGG 9836 | || || ||||||||||| || || |||||| | | ||| | || |||||| Sbjct 1196038 CGTTTGGGGTTTGCTGCCATCACATCTGCTGTGCCTAGTGATTGGTTTCCTGGGGGAAGC 1195979 Query 9837 GTGTCTT--GGTCAG---TGCACCAGAAAAAAGAGTGGATGACAACTAGAGACATGTTGG 9891 |||| || || ||||| || | ||||||||||||||| ||||||||| Sbjct 1195978 AACTCTTGAGGAAAGAACCTCACCAAAACCATGAGTGGATGACAACTGATGACATGTTGC 1195919 Query 9892 AGGTTTGGAATGAT 9905 ||| ||||| ||| Sbjct 1195918 GGGTGTGGAACGAT 1195905 Lambda K H 0.634 0.408 0.913 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34693449590280