Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_025342.1 Length=11120 Score E Sequences producing significant alignments: (Bits) Value seq1480 93.3 3e-15 seq1594 84.2 2e-12 >seq1480 Length=8353993 Score = 93.3 bits (102), Expect = 3e-15 Identities = 252/381 (66%), Gaps = 15/381 (4%) Strand=Plus/Minus Query 6474 ATCGCCAATCACATTGACTATGAAAAATGGAACAATCATCAAAGAAAGGACGCCACCGGC 6533 ||||| |||||||| || ||||||||||||||||| |||||||| || ||||| | Sbjct 8252950 ATCGCTAATCACATCGATTATGAAAAATGGAACAACTTTCAAAGAAGAGAGGCCACTTCC 8252891 Query 6534 CCTGTCTTTAAGGTCATGGGACAGTTCTTGGGATTACCAAATTTAATCTATCGAACACAT 6593 || || || | || || || || || || ||| |||| ||| || || || || ||| Sbjct 8252890 CCCGTTTTCACAGTGATTGGGCAATTTTTTGGACTACCTAATCTATTCGCCCGCACGCAT 8252831 Query 6594 GAGTTCTTTGAACAGAGCTGGATTTATTATAATGGTAGGCCTGATTTGATGGCAGTTGTT 6653 || ||||||||| | | || |||||| | | || ||| | || || | Sbjct 8252830 GAATTCTTTGAAAAATCATTAATATATTATCGAGACCGTCCAGATCTAATAAAGGTCGAA 8252771 Query 6654 GATGGGCGACTGAT--CAACTCTGGAACC----AATATAGTCTGTTGGGACGGTCAAGCT 6707 |||||| || | | | | |||| || | || | |||||| | || || || Sbjct 8252770 GATGGG---GTGGTCGCGAATGTGGACCCGGAAAGGATGATGTGTTGGAATGGACAGGCC 8252714 Query 6708 GGAGGGTTAGAAGGATTGAGACAGAAGGGTTGGACGGTTGTAGGACTCTTGATGATCATA 6767 ||||| | ||||| |||||||| || || |||| ||| | | ||| | ||| Sbjct 8252713 GGAGGACTCGAAGGGTTGAGACAAAAAGGGTGGAGTGTTCTCAATTTATTGGTAATCGAG 8252654 Query 6768 AGAGAAGCTAGAGTTCGTAACAC--AGCTG-TCAAAATTTTGGCTCAGGGAGACAACCAA 6824 || || | | |||||||||| || || || | || |||||||| ||||| || Sbjct 8252653 AGGGAGTCACGCATTCGTAACACTAAGGTGCTC---ACGTTAGCTCAGGGTGACAATCAG 8252597 Query 6825 GTGATCTGCACTCAGTATAAG 6845 || || |||||| |||| || Sbjct 8252596 GTCATTTGCACTGTGTATCAG 8252576 >seq1594 Length=5600000 Score = 84.2 bits (92), Expect = 2e-12 Identities = 184/274 (67%), Gaps = 4/274 (1%) Strand=Plus/Plus Query 6477 GCCAATCACATTGACTATGAAAAATGGAACAATCATCAAAGAAAGGACGCCACCGGCCCT 6536 || || ||| | ||||| ||||||||||| |||||| || || |||| | |||| Sbjct 3582922 GCTAACCACCTAGACTACTCCAAATGGAACAACCATCAACGAGGAGAAGCCAATGACCCT 3582981 Query 6537 GTCTTTAAGGTCATGGGACAGTTCTTGGGATTACCAAATTTAATCTATCGAACACATGAG 6596 || || ||||| ||||| || || ||||| | |||||||| | |||||| || ||| Sbjct 3582982 GTGTTCAAGGTGATGGGCCAATTTTTGGGTCTCCCAAATTTGTTTACTCGAACTCACGAG 3583041 Query 6597 TTCTTTGAACAGAGCTGGATTTATTATAATGGTAGGCCTGATTTGATGGCAGTTGTTGAT 6656 |||||| || | ||| || || || | ||| || || | ||| |||| Sbjct 3583042 TTCTTTCGGAAGTCCCTGATCTACTACAAAGATAGACCAGACCTCATGAGGGTTGAATCC 3583101 Query 6657 GGGCGACTGATCAA--CTCTGGAACCAATATAGTCTGTTGGGACGGTCAAGCTGGAGGGT 6714 ||| | | || || | |||| |||| || |||||| | || ||||| || ||| Sbjct 3583102 GGGAAAGTCATAAATGCAACAGAAC--ATATCGTTTGTTGGAAGGGCCAAGCAGGCGGGC 3583159 Query 6715 TAGAAGGATTGAGACAGAAGGGTTGGACGGTTGT 6748 |||| || || | || || || |||| ||||| Sbjct 3583160 TAGAGGGCCTGCGCCAAAAAGGATGGAGCGTTGT 3583193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35467828376560