Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_025371.1 Length=11082 Score E Sequences producing significant alignments: (Bits) Value seq1594 122 6e-24 seq1480 102 6e-18 >seq1594 Length=5600000 Score = 122 bits (134), Expect = 6e-24 Identities = 390/579 (67%), Gaps = 42/579 (7%) Strand=Plus/Plus Query 6332 GGAAGGTTCTTTTCACTGATGTCTTGGCAGTTGAGAGAGTACTTTGTGATAACGGAATAT 6391 || || ||||| || ||||| | ||| | || | |||| ||| || | || || | Sbjct 3582733 GGCAGATTCTTCGCAATGATGGCATGGGAATTCCGGGAGTTCTTCGTTGTCACCGAGCAC 3582792 Query 6392 CTGATTAAGACCCATTATGTTCCACTATTTAAAGGATTGACTATGGCAGATGACC-TCAC 6450 || || |||||||| ||||| || | ||| | || | || ||||| || |||| | || Sbjct 3582793 CTAATCAAGACCCACTATGTGCCCTTGTTTCATGGCCTAACCATGGCCGACGACCATAAC 3582852 Query 6451 ATCAGTCGTGAAGAAGATGTTGGACAACACAAACGGACAAGGATTAGACGA--CTATTCA 6508 | | || | |||||||||| | | | | | |||| ||| || | | || Sbjct 3582853 ACC-GTGATCGAGAAGATGTTAGCTGCCTCCGATGCACAAAATCCAGAGGATCCCAACCA 3582911 Query 6509 --TCGATTTGTATAGCGAATCACATTGATTACGAAAAATGGAACAATCATCA--GAGGAA 6564 || | | || || || ||| | || ||| ||||||||||| ||||| ||||| Sbjct 3582912 GGTCAACT---AT-GCTAACCACCTAGACTACTCCAAATGGAACAACCATCAACGAGGAG 3582967 Query 6565 AGAGTCAAATGGACCGGTCTTTCGCGTCATGGGACAATTTTTGGGATATCCCCGGCT-GT 6623 | || ||| || || || || || ||||| ||||||||||| | |||| | || Sbjct 3582968 A-AGCCAA-TGACCCTGTGTTCAAGGTGATGGGCCAATTTTTGGG-TCTCCCAAATTTGT 3583024 Query 6624 TTGAGAGAACTCACGAGTTCTTT--GAATCCAGCCTCATTTACTACAATGGCAGACCAGA 6681 || ||||||||||||||||| ||| | ||| || |||||||| | |||||||| Sbjct 3583025 TTACTCGAACTCACGAGTTCTTTCGGAAGTC--CCTGATCTACTACAAAGATAGACCAGA 3583082 Query 6682 TTTGATGGATGT-GAG---GGGAGATTCTTTGGTCAACACCACAGAAAAGCTGGTTTGTT 6737 | ||| || || |||| | || | || | |||||| | | ||||||| Sbjct 3583083 CCTCATGAGGGTTGAATCCGGGAAAGTCATA----AATGCAACAGAACATATCGTTTGTT 3583138 Query 6738 GGGAAGGCCAAGCAGGAGGGCTAGAAGGATTGAGGCAAAAAGGATGGAGCGTGTTGAATC 6797 || | ||||||||||| |||||||| || || | ||||||||||||||||| |||| | Sbjct 3583139 GGAAGGGCCAAGCAGGCGGGCTAGAGGGCCTGCGCCAAAAAGGATGGAGCGTTGTGAA-C 3583197 Query 6798 TA-CTAGTCATCAATAGAGAGTCATCC----ATCAGGAACA-CGATAGTCAAAGTAT-TA 6850 || || | |||| ||| |||| | ||| ||| | | ||| || |||| | | Sbjct 3583198 TACCTGGGCATC----GAGCGTCAGGCCAAGATCCAGAATACCCATA-TC-AAGTGTCTG 3583251 Query 6851 GCTCAGGGAGACAATCAGGTCATATGCACCCAGTACAAG 6889 || || |||||||| ||| | ||||||||| |||||| Sbjct 3583252 GCCCAAGGAGACAACCAGATAATATGCACCTTCTACAAG 3583290 >seq1480 Length=8353993 Score = 102 bits (112), Expect = 6e-18 Identities = 257/385 (67%), Gaps = 13/385 (3%) Strand=Plus/Minus Query 6517 TATAGCGAATCACATTGATTACGAAAAATGGAACAATCATCAGAGGAAAGAGTCAAATGG 6576 ||| || |||||||| ||||| |||||||||||||| ||| || | |||| | | | Sbjct 8252951 TATCGCTAATCACATCGATTATGAAAAATGGAACAACTTTCAAAGAAGAGAGGCCACTTC 8252892 Query 6577 ACCGGTCTTTCGC-GTCATGGGACAATTTTTGGGATATCCCCGGCTGTTTGAGAGAACTC 6635 || || |||| | || || || |||||||| ||| || || || | | || | Sbjct 8252891 CCCCGT-TTTCACAGTGATTGGGCAATTTTTTGGACTACCTAATCTATTCGCCCGCACGC 8252833 Query 6636 ACGAGTTCTTTGAATCCAGCCTCATTTACTACAATGGCAGACCAGATTTGATGGATGTGA 6695 | || ||||||||| | || || || | | | |||||| | || | || Sbjct 8252832 ATGAATTCTTTGAAAAATCATTAATATATTATCGAGACCGTCCAGATCTAATAAAGGTC- 8252774 Query 6696 GGGGAGATTCTTTGGTC---AAC----ACCACAGAAAAGCTGGTTTGTTGGGAAGGCCAA 6748 | |||| ||||| || ||| | |||| | || | |||||| | || || Sbjct 8252773 --GAAGATGGGGTGGTCGCGAATGTGGACC-CGGAAAGGATGATGTGTTGGAATGGACAG 8252717 Query 6749 GCAGGAGGGCTAGAAGGATTGAGGCAAAAAGGATGGAGCGTGTTGAATCTACTAGTCATC 6808 || ||||| || ||||| ||||| |||||||| ||||| || | ||| || | || ||| Sbjct 8252716 GCCGGAGGACTCGAAGGGTTGAGACAAAAAGGGTGGAGTGTTCTCAATTTATTGGTAATC 8252657 Query 6809 AATAGAGAGTCATCCATCAGGAACACGATAGTCAAAGTATTAGCTCAGGGAGACAATCAG 6868 | || |||||| ||| | ||||| | || ||||||||||| ||||||||| Sbjct 8252656 GAGAGGGAGTCACGCATTCGTAACACTAAGGTGCTCACGTTAGCTCAGGGTGACAATCAG 8252597 Query 6869 GTCATATGCACCCAGTACAAGACAA 6893 ||||| ||||| ||| |||||| Sbjct 8252596 GTCATTTGCACTGTGTATCAGACAA 8252572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35346231707640