Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_025378.1 Length=11202 Score E Sequences producing significant alignments: (Bits) Value seq1594 143 2e-30 seq1774 141 7e-30 seq1107 141 7e-30 seq1942 89.7 4e-14 >seq1594 Length=5600000 Score = 143 bits (158), Expect = 2e-30 Identities = 394/590 (67%), Gaps = 18/590 (3%) Strand=Plus/Plus Query 6353 AAAGAGAGAGAATTAAAATTGATTGGGCGTTTCTTTTCTCTCATGTCTTGGAAATTGAGA 6412 ||||| || ||| | || ||| || | ||||| | | ||| | ||| |||| | Sbjct 3582709 AAAGAAAGGGAAATCAAGGAGATGGGCAGATTCTTCGCAATGATGGCATGGGAATTCCGG 3582768 Query 6413 GAATACTTCGTCATAACCGAGCACCTAATTAAGACTCACTTTGTCCCTCTGTTCCACGGA 6472 || | |||||| | |||||||||||||| ||||| |||| ||| || |||| || || Sbjct 3582769 GAGTTCTTCGTTGTCACCGAGCACCTAATCAAGACCCACTATGTGCCCTTGTTTCATGGC 3582828 Query 6473 CTTACGATGGCAGATGATC-TCACATCAGTGATCAAGAAGATGATGGACAGTTCCTCGGG 6531 || || ||||| || || | | ||| | |||||| |||||||| | | | |||| | Sbjct 3582829 CTAACCATGGCCGACGACCATAACACC-GTGATCGAGAAGATGTTAGC---TGCCTCCGA 3582884 Query 6532 -GCAGGGGTTGACAGATTA-CTCAGCTGTATGCA-TA-GCCAATCATATCGACTACGAAA 6587 ||| | |||| | | || | | | || || || || | |||||| | Sbjct 3582885 TGCACAAAATC-CAGAGGATCCCAACCAGGTCAACTATGCTAACCACCTAGACTACTCCA 3582943 Query 6588 AATGGAACAATCACCAGCGGAAAGAATCCAATGGGCCGGTATTCCGAGTAATGGGCCAAT 6647 |||||||||| || || || |||| |||||| || || ||| || |||||||||| Sbjct 3582944 AATGGAACAACCATCAACGAGGAGAAGCCAATGACCCTGTGTTCAAGGTGATGGGCCAAT 3583003 Query 6648 TCTTGGGCTTCCCCAATCTGATATCCAGAACGCACGAATTCTTTGAGAAAAGTTTGGTTT 6707 | ||||| |||| ||| || | | |||| ||||| |||||| ||| || | | Sbjct 3583004 TTTTGGGTCTCCCAAATTTGTTTACTCGAACTCACGAGTTCTTTCGGAAGTCCCTGATCT 3583063 Query 6708 ATTACAATGGCCGGCCAGATTTGATGAGAGT---ATCGGGGAATTCTTTGACAAACACGA 6764 | ||||| | | ||||| | ||||| || ||| ||||| | | ||| | | Sbjct 3583064 ACTACAAAGATAGACCAGACCTCATGAGGGTTGAATCCGGGAA---AGTCATAAATGCAA 3583120 Query 6765 CCAACCTGAGGGTTTGCTGGGAGGGCCAAGCCGGCGGTCTGGAAGGTTTGCGGCAGAAGG 6824 | | | | ||||| ||| |||||||||| ||||| || || || |||| || || | Sbjct 3583121 CAGAACATATCGTTTGTTGGAAGGGCCAAGCAGGCGGGCTAGAGGGCCTGCGCCAAAAAG 3583180 Query 6825 GATGGAGCATTTTGAACCTACTGGTGATTCAAAGAGAAGCCAAAATCCGGAACACCTCAG 6884 |||||||| || ||||| |||| || | | | ||||| |||| ||| ||| || Sbjct 3583181 GATGGAGCGTTGTGAACTACCTGGGCATCGAGCGTCAGGCCAAGATCCAGAATACC-CAT 3583239 Query 6885 TGAAAGT-TCTAGCACAGGGAGACAATCAGGTGATCTGTACCCAGTACAA 6933 |||| ||| || || |||||||| ||| | || || ||| ||||| Sbjct 3583240 ATCAAGTGTCTGGCCCAAGGAGACAACCAGATAATATGCACCTTCTACAA 3583289 Score = 89.7 bits (98), Expect = 4e-14 Identities = 119/163 (73%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 6353 AAAGAGAGAGAATTAAAATTGATTGGGCGTTTCTTTTCTCTCATGTCTTGGAAATTGAGA 6412 || ||||| ||| | ||| || || || ||||| | | ||| ||||| || | || Sbjct 5062115 AAGGAGAGGGAAATCAAAGAAATGGGCCGATTCTTCGCCATGATGGCTTGGGAACTCCGA 5062174 Query 6413 GAATACTTCGTCATAACCGAGCACCTAATTAAGACTCACTTTGTCCCTCTGTTCCACGGA 6472 |||| ||||||| | || ||||||||||| ||||| |||| ||| || |||| || || Sbjct 5062175 GAATTCTTCGTCGTCACTGAGCACCTAATCAAGACCCACTATGTGCCCTTGTTTCATGGC 5062234 Query 6473 CTTACGATGGCAGATGATC-TCACATCAGTGATCAAGAAGATG 6514 || || ||||| || || | | ||| | || ||| |||||||| Sbjct 5062235 CTAACCATGGCCGACGACCATAACA-CCGTTATCGAGAAGATG 5062276 >seq1774 Length=2904822 Score = 141 bits (156), Expect = 7e-30 Identities = 364/542 (67%), Gaps = 22/542 (4%) Strand=Plus/Minus Query 6373 GATTGGGCGTTTCTTTTCTCTCATGTCTTGGAAATTGAGAGAATACTTCGTCATAACCGA 6432 ||| ||| | || ||| | | ||| | ||| | | ||||| | || || | || || Sbjct 1686498 GATGGGGAGATTTTTTGCCATGATGGCGTGGGAGCTTAGAGAGTTTTTTGTGGTCACAGA 1686439 Query 6433 GCACCTAATTAAGACTCACTTTGTCCCTCTGTTCCACGGACTTACGATGGCAGATGATCT 6492 || | || || || |||| ||| || |||||||||| || || |||||||| || | Sbjct 1686438 ACATTTGATCAAAACCCACTATGTTCCATTGTTCCACGGGCTCACCATGGCAGACGACCA 1686379 Query 6493 CACATCAGTGATCAAGAAGATGATGGACAG-TTCCTCGGGGCAGG----GGTTGACA-GA 6546 || ||||||| |||||||| | | ||| ||| | ||| || ||| || Sbjct 1686378 CAATACAGTGATAGAGAAGATGCTCG-CAGCTTCAGATGCCCAGAACCCGGAAGACCCGA 1686320 Query 6547 TTACTCAGCTGTATGCATA-GCCAATCATATCGACTACGAAAAATGGAACAATCACCAGC 6605 || || | || || || ||||| | || ||| ||| ||||| || ||||||| Sbjct 1686319 --ACCAAG-TAAAT---TACGCGAATCACCTGGATTACTCAAAGTGGAATAACCACCAGC 1686266 Query 6606 GGAAAGAATCCAATGGGCCGGTATTCCGAGTAATGGGCCAATTCTTGGGCTTCCCCAATC 6665 | ||| | || | ||||| || | || ||||| |||||| |||| |||| || | Sbjct 1686265 GAGGAGAGGCGAACGACCCGGTGTTTAGGGTCATGGGTCAATTCCTGGGGCTCCCGAACC 1686206 Query 6666 TGATATCCAGAACGCACGAATTCTTTGAGAAAAGTTTGGTTTATTACAATGGCCGGCCAG 6725 || | | | || || || ||||| ||||| | || |||||||| | |||||| | Sbjct 1686205 TGTTCACTCGGACCCATGAGTTCTTCAAGAAATCCCTTGTCTATTACAAAGACCGGCCGG 1686146 Query 6726 ATTTGATGAGAGT---ATCGGGGAATTCTTTGACAAACACGACCAACCTGAGGGTTTGCT 6782 | |||||||||| ||| || || | | || | ||| | | ||||||| Sbjct 1686145 ACCTGATGAGAGTGGAATCTGGAAAGG---TCATCAATGCCACCGAAAACATCGTTTGCT 1686089 Query 6783 GGGAGGGCCAAGCCGGCGGTCTGGAAGGTTTGCGGCAGAAGGGATGGAGCATTTTGAACC 6842 ||||||||||||||||||| |||||||| | || |||||||||||||| | | ||| Sbjct 1686088 GGGAGGGCCAAGCCGGCGGACTGGAAGGGCTACGACAGAAGGGATGGAGTGTGGTCAACT 1686029 Query 6843 TACTGGTGATTCAAAGAGAAGCCAAAATCCGGAACAC-CTCAGTGAAAGTTCTAGCACAG 6901 || | ||| |||| |||| || ||||||||||| | || | ||| | |||| ||| Sbjct 1686028 ACCTTGGGATCGAAAGGCAAGCAAAGATCCGGAACACGCACA-TCAAATGTTTAGCCCAG 1685970 Query 6902 GG 6903 || Sbjct 1685969 GG 1685968 >seq1107 Length=3620151 Score = 141 bits (156), Expect = 7e-30 Identities = 364/542 (67%), Gaps = 22/542 (4%) Strand=Plus/Minus Query 6373 GATTGGGCGTTTCTTTTCTCTCATGTCTTGGAAATTGAGAGAATACTTCGTCATAACCGA 6432 ||| ||| | || ||| | | ||| | ||| | | ||||| | || || | || || Sbjct 2215006 GATGGGGAGATTTTTTGCCATGATGGCGTGGGAGCTTAGAGAGTTTTTTGTGGTCACAGA 2214947 Query 6433 GCACCTAATTAAGACTCACTTTGTCCCTCTGTTCCACGGACTTACGATGGCAGATGATCT 6492 || | || || || |||| ||| || |||||||||| || || |||||||| || | Sbjct 2214946 ACATTTGATCAAAACCCACTATGTTCCATTGTTCCACGGGCTCACCATGGCAGACGACCA 2214887 Query 6493 CACATCAGTGATCAAGAAGATGATGGACAG-TTCCTCGGGGCAGG----GGTTGACA-GA 6546 || ||||||| |||||||| | | ||| ||| | ||| || ||| || Sbjct 2214886 CAATACAGTGATAGAGAAGATGCTCG-CAGCTTCAGATGCCCAGAACCCGGAAGACCCGA 2214828 Query 6547 TTACTCAGCTGTATGCATA-GCCAATCATATCGACTACGAAAAATGGAACAATCACCAGC 6605 || || | || || || ||||| | || ||| ||| ||||| || ||||||| Sbjct 2214827 --ACCAAG-TAAAT---TACGCGAATCACCTTGATTACTCAAAGTGGAATAACCACCAGC 2214774 Query 6606 GGAAAGAATCCAATGGGCCGGTATTCCGAGTAATGGGCCAATTCTTGGGCTTCCCCAATC 6665 | ||| | || | ||||| || | || ||||| |||||| |||| |||| || | Sbjct 2214773 GAGGAGAGGCGAACGACCCGGTGTTTAGGGTCATGGGTCAATTCCTGGGGCTCCCGAACC 2214714 Query 6666 TGATATCCAGAACGCACGAATTCTTTGAGAAAAGTTTGGTTTATTACAATGGCCGGCCAG 6725 || | | | || || || ||||| ||||| | || |||||||| | |||||| | Sbjct 2214713 TGTTCACTCGGACCCATGAGTTCTTCAAGAAATCCCTTGTCTATTACAAAGACCGGCCGG 2214654 Query 6726 ATTTGATGAGAGT---ATCGGGGAATTCTTTGACAAACACGACCAACCTGAGGGTTTGCT 6782 | |||||||||| ||| || || | | || | ||| | | ||||||| Sbjct 2214653 ACCTGATGAGAGTGGAATCTGGAAAGG---TCATCAATGCCACCGAAAACATCGTTTGCT 2214597 Query 6783 GGGAGGGCCAAGCCGGCGGTCTGGAAGGTTTGCGGCAGAAGGGATGGAGCATTTTGAACC 6842 ||||||||||||||||||| |||||||| | || |||||||||||||| | | ||| Sbjct 2214596 GGGAGGGCCAAGCCGGCGGACTGGAAGGGCTACGACAGAAGGGATGGAGTGTGGTCAACT 2214537 Query 6843 TACTGGTGATTCAAAGAGAAGCCAAAATCCGGAACAC-CTCAGTGAAAGTTCTAGCACAG 6901 || | ||| |||| |||| || ||||||||||| | || | ||| | |||| ||| Sbjct 2214536 ACCTTGGGATCGAAAGGCAAGCAAAGATCCGGAACACGCACA-TCAAATGTTTAGCCCAG 2214478 Query 6902 GG 6903 || Sbjct 2214477 GG 2214476 >seq1942 Length=1338801 Score = 89.7 bits (98), Expect = 4e-14 Identities = 119/163 (73%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 6353 AAAGAGAGAGAATTAAAATTGATTGGGCGTTTCTTTTCTCTCATGTCTTGGAAATTGAGA 6412 || ||||| ||| | ||| || || || ||||| | | ||| ||||| || | || Sbjct 906743 AAGGAGAGGGAAATTAAAGAAATGGGCCGATTCTTCGCCATGATGGCTTGGGAACTCCGA 906802 Query 6413 GAATACTTCGTCATAACCGAGCACCTAATTAAGACTCACTTTGTCCCTCTGTTCCACGGA 6472 |||| ||||||| | || ||||||||||| ||||| |||| ||| || |||| || || Sbjct 906803 GAATTCTTCGTCGTCACTGAGCACCTAATCAAGACCCACTATGTGCCCTTGTTTCATGGC 906862 Query 6473 CTTACGATGGCAGATGATC-TCACATCAGTGATCAAGAAGATG 6514 || || ||||| || || | | ||| | || ||| |||||||| Sbjct 906863 CTAACCATGGCCGACGACCATAACA-CCGTTATCGAGAAGATG 906904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35730221188440