Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_025387.1 Length=11492 Score E Sequences producing significant alignments: (Bits) Value seq1107 129 4e-26 seq1774 123 2e-24 >seq1107 Length=3620151 Score = 129 bits (142), Expect = 4e-26 Identities = 390/589 (66%), Gaps = 29/589 (5%) Strand=Plus/Minus Query 6594 TGGTGATCGGGCTAAAACCAAAAGAAAGAGAATTGAAGCTGGTGGGTAGGTTCTTCTCGT 6653 ||||||||| ||| | | || ||| |||| | ||| | |||| || || || | Sbjct 2215046 TGGTGATCGCCCTACGAGCCAAGGAACGAGAGATCAAGGAGATGGGGAGATTTTTTGCCA 2214987 Query 6654 TGATGTCATGGGAGCTCAGGGAGTACTTTGTGGTGACTGAGTATCTGATCAAGAAGCATT 6713 ||||| | |||||||| || |||| |||||||| || || || ||||||| | || | Sbjct 2214986 TGATGGCGTGGGAGCTTAGAGAGTTTTTTGTGGTCACAGAACATTTGATCAAAACCCACT 2214927 Query 6714 TTGTCCCTTTGTTTAAGGGGTTGGCCATGGCTGATGACCTGACAGAGGTGATAAAAAAGA 6773 ||| || ||||| | ||| | ||||||| || |||| | |||||| | |||| Sbjct 2214926 ATGTTCCATTGTTCCACGGGCTCACCATGGCAGACGACCACAATACAGTGATAGAGAAGA 2214867 Query 6774 TGCTGGACAG-TGCATATGGCCAGGGACTGGACGACTACAGTGCAGTGTGTATT--GCCA 6830 |||| | ||| | || ||| |||| | ||| ||| | | | || ||| || | Sbjct 2214866 TGCTCG-CAGCTTCAGATGCCCAGAACCCGGAAGAC--CCGAACCAAGTAAATTACGCGA 2214810 Query 6831 ACCACATTGATTATGAGAAGTGGAACAACCACCAG--AGGAAGGAGTCCAACAGATATGT 6888 | ||| ||||||| |||||||| ||||||||| |||| ||| | ||| || Sbjct 2214809 ATCACCTTGATTACTCAAAGTGGAATAACCACCAGCGAGGA--GAGGCGAACGACCCGGT 2214752 Query 6889 ATTCAGAGTTATGGGTCAATGTTTGGGGTACCCTAACTTGATTGAACGGACTCATGAGTT 6948 || || || |||||||||| ||||| ||| ||| || | ||||| |||||||| Sbjct 2214751 GTTTAGGGTCATGGGTCAATTCCTGGGGCTCCCGAACCTGTTCACTCGGACCCATGAGTT 2214692 Query 6949 CTTTGAGAACAGTTTGGTTTATTTGA---ACATG--AGACCAGATGAGATGGTGGTCGAT 7003 ||| |||| | || |||| | || | |||| ||||||| |||| | Sbjct 2214691 CTTCAAGAAATCCCTTGTCTATTACAAAGACCGGCCGGACCTGATGAGA--GTGGAATCT 2214634 Query 7004 GGTA--GACAT--GTTCGACCGAGAGGGGACATGATGTCCTGTTGGGAGGGACAAGCAGG 7059 || | | ||| | | ||||| | |||| | || |||||||| ||||| || Sbjct 2214633 GGAAAGGTCATCAATGCCACCGAAA----ACATCGT---TTGCTGGGAGGGCCAAGCCGG 2214581 Query 7060 TGGTCTGGAAGGGCTGAGGCAGAAGGGGTGGAGCATCCTCAACCTGCTTCTGATCAGAAG 7119 || ||||||||||| | |||||||| ||||| | ||||| ||| |||| ||| Sbjct 2214580 CGGACTGGAAGGGCTACGACAGAAGGGATGGAGTGTGGTCAACTACCTTGGGATCGAAAG 2214521 Query 7120 GATCTCaaaaatccgaaatacaaaaataaaaatATTGGCGCAAGGGGAC 7168 | |||| ||||| || || | || ||| || || | ||||||| Sbjct 2214520 GCAAGCAAAGATCCGGAACACGCACATCAAATGTTTAGC-CCAGGGGAC 2214473 >seq1774 Length=2904822 Score = 123 bits (136), Expect = 2e-24 Identities = 387/587 (66%), Gaps = 28/587 (5%) Strand=Plus/Minus Query 6594 TGGTGATCGGGCTAAAACCAAAAGAAAGAGAATTGAAGCTGGTGGGTAGGTTCTTCTCGT 6653 ||||||||| ||| | | || ||| |||| | ||| | |||| || || || | Sbjct 1686538 TGGTGATCGCCCTACGAGCCAAGGAACGAGAGATCAAGGAGATGGGGAGATTTTTTGCCA 1686479 Query 6654 TGATGTCATGGGAGCTCAGGGAGTACTTTGTGGTGACTGAGTATCTGATCAAGAAGCATT 6713 ||||| | |||||||| || |||| |||||||| || || || ||||||| | || | Sbjct 1686478 TGATGGCGTGGGAGCTTAGAGAGTTTTTTGTGGTCACAGAACATTTGATCAAAACCCACT 1686419 Query 6714 TTGTCCCTTTGTTTAAGGGGTTGGCCATGGCTGATGACCTGACAGAGGTGATAAAAAAGA 6773 ||| || ||||| | ||| | ||||||| || |||| | |||||| | |||| Sbjct 1686418 ATGTTCCATTGTTCCACGGGCTCACCATGGCAGACGACCACAATACAGTGATAGAGAAGA 1686359 Query 6774 TGCTGGACAG-TGCATATGGCCAGGGACTGGACGACTACAGTGCAGTGTGTATT--GCCA 6830 |||| | ||| | || ||| |||| | ||| ||| | | | || ||| || | Sbjct 1686358 TGCTCG-CAGCTTCAGATGCCCAGAACCCGGAAGAC--CCGAACCAAGTAAATTACGCGA 1686302 Query 6831 ACCACATTGATTATGAGAAGTGGAACAACCACCAG--AGGAAGGAGTCCAACAGATATGT 6888 | ||| | ||||| |||||||| ||||||||| |||| ||| | ||| || Sbjct 1686301 ATCACCTGGATTACTCAAAGTGGAATAACCACCAGCGAGGA--GAGGCGAACGACCCGGT 1686244 Query 6889 ATTCAGAGTTATGGGTCAATGTTTGGGGTACCCTAACTTGATTGAACGGACTCATGAGTT 6948 || || || |||||||||| ||||| ||| ||| || | ||||| |||||||| Sbjct 1686243 GTTTAGGGTCATGGGTCAATTCCTGGGGCTCCCGAACCTGTTCACTCGGACCCATGAGTT 1686184 Query 6949 CTTTGAGAACAGTTTGGTTTATTTGA---ACATG--AGACCAGATGAGATGGTGGTCGAT 7003 ||| |||| | || |||| | || | |||| ||||||| |||| | Sbjct 1686183 CTTCAAGAAATCCCTTGTCTATTACAAAGACCGGCCGGACCTGATGAGA--GTGGAATCT 1686126 Query 7004 GGTA--GACAT--GTTCGACCGAGAGGGGACATGATGTCCTGTTGGGAGGGACAAGCAGG 7059 || | | ||| | | ||||| | |||| | || |||||||| ||||| || Sbjct 1686125 GGAAAGGTCATCAATGCCACCGAAA----ACATCGT---TTGCTGGGAGGGCCAAGCCGG 1686073 Query 7060 TGGTCTGGAAGGGCTGAGGCAGAAGGGGTGGAGCATCCTCAACCTGCTTCTGATCAGAAG 7119 || ||||||||||| | |||||||| ||||| | ||||| ||| |||| ||| Sbjct 1686072 CGGACTGGAAGGGCTACGACAGAAGGGATGGAGTGTGGTCAACTACCTTGGGATCGAAAG 1686013 Query 7120 GATCTCaaaaatccgaaatacaaaaataaaaatATTGGCGCAAGGGG 7166 | |||| ||||| || || | || ||| || || || |||| Sbjct 1686012 GCAAGCAAAGATCCGGAACACGCACATCAAATGTTTAGCCCAGGGGG 1685966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36658195767040