Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_025392.1 Length=11121 Score E Sequences producing significant alignments: (Bits) Value seq1480 127 1e-25 seq1594 120 2e-23 >seq1480 Length=8353993 Score = 127 bits (140), Expect = 1e-25 Identities = 251/368 (68%), Gaps = 9/368 (2%) Strand=Plus/Minus Query 6493 ATCGCAAATCACATAGATTATGAGAAATGGAACAATCACCAGAGAAGAACATCAAACGAA 6552 ||||| |||||||| |||||||| ||||||||||| || |||||| | | Sbjct 8252950 ATCGCTAATCACATCGATTATGAAAAATGGAACAACTTTCAAAGAAGAGAGGCCACTTCC 8252891 Query 6553 CCTGTATTCAAAGTGATGGGACAATTTCTGGGATATCCAAATTTGATATCACGCACCCAT 6612 || || |||| |||||| || |||||| | ||| || ||| | | | ||||| ||| Sbjct 8252890 CCCGTTTTCACAGTGATTGGGCAATTTTTTGGACTACCTAATCTATTCGCCCGCACGCAT 8252831 Query 6613 GAATTCTTTGAGAAGAGTTTGATTTATTATAATGGAAGACCCGATTTGATGAGAGTCCGG 6672 ||||||||||| || || || |||||| | | || ||| | || | ||| Sbjct 8252830 GAATTCTTTGAAAAATCATTAATATATTATCGAGACCGTCCAGATCTAATAAAGGTCGAA 8252771 Query 6673 AATGGAGTGGTTGAGAATTC---CTCAGATACTAGAGTATGTTGGAATGGACAAGCCGGG 6729 |||| ||||| | |||| | | || | | | |||||||||||||| ||||| Sbjct 8252770 GATGGGGTGGTCGCGAATGTGGACCCGGAAAGGATGATGTGTTGGAATGGACAGGCCGGA 8252711 Query 6730 GGTCTAGAGGGTTTGAGACAGAAGGGCTGGAGCATCCTAAATTTGTTGGTTATACAGAGG 6789 || || || || |||||||| || || ||||| | || ||||| ||||| || ||||| Sbjct 8252710 GGACTCGAAGGGTTGAGACAAAAAGGGTGGAGTGTTCTCAATTTATTGGTAATCGAGAGG 8252651 Query 6790 GAATCCAAAATCCGTAATAC--ATCTG-TCAAGGTATTGGCACAAGGAGACAATCAAGTA 6846 || || || ||||| || | || ||| | || || || || |||||||| || Sbjct 8252650 GAGTCACGCATTCGTAACACTAAGGTGCTCACG---TTAGCTCAGGGTGACAATCAGGTC 8252594 Query 6847 ATTTGTAC 6854 ||||| || Sbjct 8252593 ATTTGCAC 8252586 >seq1594 Length=5600000 Score = 120 bits (132), Expect = 2e-23 Identities = 375/572 (66%), Gaps = 28/572 (5%) Strand=Plus/Plus Query 6307 GGTAGATTCTTTTCATTGATGTCATGGAAATTGCGAGAATATTTTGTGATAACCGAATAT 6366 || |||||||| || ||||| ||||| |||| || || | || || | ||||| | Sbjct 3582733 GGCAGATTCTTCGCAATGATGGCATGGGAATTCCGGGAGTTCTTCGTTGTCACCGAGCAC 3582792 Query 6367 CTGATCAAAACGCATTTTGTCCCTCTCTTTTATGGACTCACCATGGCTGATGAT-ATGAC 6425 || ||||| || || | ||| || | ||| |||| || |||||||| || || || || Sbjct 3582793 CTAATCAAGACCCACTATGTGCCCTTGTTTCATGGCCTAACCATGGCCGACGACCATAAC 3582852 Query 6426 TTCAGTCATCAAGAAAATGCTAGAAAGTTCATCCGGT---CAAGGGTTGAAT---GACTA 6479 | || ||| |||| ||| ||| | | |||| | ||| ||| || | Sbjct 3582853 ACC-GTGATCGAGAAGATGTTAGC---TGCCTCCGATGCACAA------AATCCAGAGGA 3582902 Query 6480 TTCTGCAATC---TCAATC--GCAAATCACATAGATTATGAGAAATGGAACAATCACCAG 6534 | | ||| | |||| || || ||| |||| || ||||||||||| || || Sbjct 3582903 TCC--CAACCAGGTCAACTATGCTAACCACCTAGACTACTCCAAATGGAACAACCATCAA 3582960 Query 6535 AGAAGAACATCAAACGAACCTGTATTCAAAGTGATGGGACAATTTCTGGGATATCCAAAT 6594 || || | | || || ||||| ||||| |||||||| |||||| |||| |||||| Sbjct 3582961 CGAGGAGAAGCCAATGACCCTGTGTTCAAGGTGATGGGCCAATTTTTGGGTCTCCCAAAT 3583020 Query 6595 TTGATATCACGCACCCATGAATTCTTTGAGAAGAGTTTGATTTATTATAATGGAAGACCC 6654 ||| | | || || || || |||||| |||| |||| || || || | ||||| Sbjct 3583021 TTGTTTACTCGAACTCACGAGTTCTTTCGGAAGTCCCTGATCTACTACAAAGATAGACCA 3583080 Query 6655 GATTTGATGAGAGTCCGGAAT--GGAGTGGTTGAGAATTCCTCAGATACTAGAGTATGTT 6712 || | ||||| || |||| || || ||| | |||| || || |||| Sbjct 3583081 GACCTCATGAGGGT--TGAATCCGGGAAAGTCATAAATGCAACAGAACATATCGTTTGTT 3583138 Query 6713 GGAATGGACAAGCCGGGGGTCTAGAGGGTTTGAGACAGAAGGGCTGGAGCATCCTAAATT 6772 |||| || ||||| || || |||||||| || | || || || |||||| | | || | Sbjct 3583139 GGAAGGGCCAAGCAGGCGGGCTAGAGGGCCTGCGCCAAAAAGGATGGAGCGTTGTGAACT 3583198 Query 6773 TGTTGGTTATACAGAGGGAATCCAAAATCCGTAATACATCTGTCAAGGTATTGGCACAAG 6832 ||| || || | | |||| |||| ||||| | ||||| |||| |||| Sbjct 3583199 ACCTGGGCATCGAGCGTCAGGCCAAGATCCAGAATACCCATATCAAGTGTCTGGCCCAAG 3583258 Query 6833 GAGACAATCAAGTAATTTGTACCCAATACAAG 6864 ||||||| || |||| || ||| |||||| Sbjct 3583259 GAGACAACCAGATAATATGCACCTTCTACAAG 3583290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35471028288900