Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_025405.1 Length=11124 Score E Sequences producing significant alignments: (Bits) Value seq1774 118 8e-23 seq1107 116 3e-22 seq1594 105 5e-19 >seq1774 Length=2904822 Score = 118 bits (130), Expect = 8e-23 Identities = 248/366 (68%), Gaps = 3/366 (1%) Strand=Plus/Minus Query 6304 GAGCAAAGGAGAGAGAGTTGAAGAACAAAGGACGATTCTTTGCACTGATGTCTTGGAGAC 6363 |||| ||||| ||||| | ||| | | || |||| ||||| ||||| | ||| | Sbjct 1686523 GAGCCAAGGAACGAGAGATCAAGGAGATGGGGAGATTTTTTGCCATGATGGCGTGGGAGC 1686464 Query 6364 TTAGAGAATATTTTGTGGTCACAGAATATTTGATCAAAAAGCATTACATCCCTTTGTTCA 6423 ||||||| | |||||||||||||||| |||||||||||| || || | || |||||| Sbjct 1686463 TTAGAGAGTTTTTTGTGGTCACAGAACATTTGATCAAAACCCACTATGTTCCATTGTTCC 1686404 Query 6424 AAGGCTTGACCATGGCGGATGATCTAAATACAGTAATAGAAAAGATGATTCAGAGCACAA 6483 | || | |||||||| || || | |||||||| ||||| |||||| || ||| | Sbjct 1686403 ACGGGCTCACCATGGCAGACGACCACAATACAGTGATAGAGAAGATG-CTCGCAGCTTCA 1686345 Query 6484 GCGGTCATGATAGAGAAGATAGCCGAAGACTTGTCACCGTCTGCAACCATTTGGATTATG 6543 | | | || | | | | ||||| | || | | || || ||||||| Sbjct 1686344 GATGCCCAGAACCCGGA-AGACCCGAA-CCAAGTAAATTACGCGAATCACCTGGATTACT 1686287 Query 6544 AAAAATGGAACAACAATCAAAGGGATGAGTCAAACCATGCGGTATTCAAAGTGATGGGCC 6603 ||| ||||| ||| | || | | ||| | ||| | |||| || | || ||||| | Sbjct 1686286 CAAAGTGGAATAACCACCAGCGAGGAGAGGCGAACGACCCGGTGTTTAGGGTCATGGGTC 1686227 Query 6604 AATTTTTAGGATTTCCCAATTTGATAACTAGAACCCATGAGATATTTCAGAAATCCCTTA 6663 |||| | || | || || || | ||| | ||||||||| | || ||||||||||| Sbjct 1686226 AATTCCTGGGGCTCCCGAACCTGTTCACTCGGACCCATGAGTTCTTCAAGAAATCCCTTG 1686167 Query 6664 TTTATT 6669 | |||| Sbjct 1686166 TCTATT 1686161 >seq1107 Length=3620151 Score = 116 bits (128), Expect = 3e-22 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 6304 GAGCAAAGGAGAGAGAGTTGAAGAACAAAGGACGATTCTTTGCACTGATGTCTTGGAGAC 6363 |||| ||||| ||||| | ||| | | || |||| ||||| ||||| | ||| | Sbjct 2215031 GAGCCAAGGAACGAGAGATCAAGGAGATGGGGAGATTTTTTGCCATGATGGCGTGGGAGC 2214972 Query 6364 TTAGAGAATATTTTGTGGTCACAGAATATTTGATCAAAAAGCATTACATCCCTTTGTTCA 6423 ||||||| | |||||||||||||||| |||||||||||| || || | || |||||| Sbjct 2214971 TTAGAGAGTTTTTTGTGGTCACAGAACATTTGATCAAAACCCACTATGTTCCATTGTTCC 2214912 Query 6424 AAGGCTTGACCATGGCGGATGATCTAAATACAGTAATAGAAAAGATG 6470 | || | |||||||| || || | |||||||| ||||| |||||| Sbjct 2214911 ACGGGCTCACCATGGCAGACGACCACAATACAGTGATAGAGAAGATG 2214865 >seq1594 Length=5600000 Score = 105 bits (116), Expect = 5e-19 Identities = 329/502 (66%), Gaps = 27/502 (5%) Strand=Plus/Plus Query 6300 TTGAGAGCAAAGGAGAGAGAGTTGAAGAACAAAGGACGATTCTTTGCACTGATGTCTTGG 6359 ||||| || || || || || | ||| | | || ||||||| ||| ||||| | ||| Sbjct 3582700 TTGAGGGCTAAAGAAAGGGAAATCAAGGAGATGGGCAGATTCTTCGCAATGATGGCATGG 3582759 Query 6360 AGACTTAGAGAATATTTTGTGGTCACAGAATATTTGATCAAAAAGCATTACATCCCTTTG 6419 | | | || | || || ||||| || | | ||||| | || || | || ||| Sbjct 3582760 GAATTCCGGGAGTTCTTCGTTGTCACCGAGCACCTAATCAAGACCCACTATGTGCCCTTG 3582819 Query 6420 TTCAAAGGCTTGACCATGGCGGATGATCTAAATACAGTAATAGAAAAGATGAT------- 6472 || | ||| | |||||||| || || | || || || || || |||||| | Sbjct 3582820 TTTCATGGCCTAACCATGGCCGACGACCATAACACCGTGATCGAGAAGATGTTAGCTGCC 3582879 Query 6473 TCAGA-GCACAAGCGGTCATGATAGAGAAGATAGCCGAAGACTTGTCACCGTCTGC-AAC 6530 || || |||||| || ||| ||| || || | |||| | | ||| ||| Sbjct 3582880 TCCGATGCACAAA--------ATCCAGAGGAT--CCCAAC-CAGGTCAAC-TATGCTAAC 3582927 Query 6531 CATTTGGATTATGAAAAATGGAACAACAATCAAAG-GGATGAGTCAA--ACCATGCGGTA 6587 || | || || |||||||||||| ||||| | ||| || ||| ||| | || Sbjct 3582928 CACCTAGACTACTCCAAATGGAACAACCATCAACGAGGAGAAGCCAATGACC---CTGTG 3582984 Query 6588 TTCAAAGTGATGGGCCAATTTTTAGGATTTCCCAATTTGATAACTAGAACCCATGAGATA 6647 ||||| ||||||||||||||||| || | || |||||| | ||| |||| || ||| | Sbjct 3582985 TTCAAGGTGATGGGCCAATTTTTGGGTCTCCCAAATTTGTTTACTCGAACTCACGAGTTC 3583044 Query 6648 TTTCAGAAATCCCTTATTTATTTTGTAAATAGACCAGACCTCATGACAACCCAAAACGGA 6707 |||| ||| ||||| || || | | |||||||||||||||||| || ||| Sbjct 3583045 TTTCGGAAGTCCCTGATCTACTACAAAGATAGACCAGACCTCATGAGGGTTGAATCCGGG 3583104 Query 6708 GAAATAATCAACAGAACAGAACAACGAGTCTGCTGGCAAGGACAGGATGGAGGATTAGAA 6767 || | || || ||||||||| || || ||| | || || | || || |||| Sbjct 3583105 AAAGTCATAAATGCAACAGAACATATCGTTTGTTGGAAGGGCCAAGCAGGCGGGCTAGAG 3583164 Query 6768 GGTTTAAGACAAAAAGGTTGGA 6789 || | | |||||||| |||| Sbjct 3583165 GGCCTGCGCCAAAAAGGATGGA 3583186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35480628025920