Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_025406.1 Length=11141 Score E Sequences producing significant alignments: (Bits) Value seq1594 136 3e-28 seq1480 104 2e-18 >seq1594 Length=5600000 Score = 136 bits (150), Expect = 3e-28 Identities = 340/509 (67%), Gaps = 12/509 (2%) Strand=Plus/Plus Query 6352 GGTAGATTCTTTTCATTGATGTCATGGGAGTTACGAGAGTACTTTGTCATTACCGAATAT 6411 || |||||||| || ||||| ||||||| || || |||| ||| || | ||||| | Sbjct 3582733 GGCAGATTCTTCGCAATGATGGCATGGGAATTCCGGGAGTTCTTCGTTGTCACCGAGCAC 3582792 Query 6412 TTAATAAAACACCATTTTGTACCTCTATTTAAGGGATTAACAATGGCAGATGAT-ATGAC 6470 |||| || ||| | ||| || | ||| | || |||| ||||| || || || || Sbjct 3582793 CTAATCAAGACCCACTATGTGCCCTTGTTTCATGGCCTAACCATGGCCGACGACCATAAC 3582852 Query 6471 AGAAGTGATCAAAAAGATGCTGGAAAGAAGTCAAGGC-CAAGGAGAATT-AGACTATC-- 6526 | |||||| | |||||| | | | | | || ||| ||| ||| ||| Sbjct 3582853 ACC-GTGATCGAGAAGATGTTAGCT-GCCTCCGATGCACAA----AATCCAGAGGATCCC 3582906 Query 6527 -AACATGTGAGCATAGCGAACCATATAGATTATGAAAAGTGGAACAATCATCAAAGGAAA 6585 | || || | | || ||||| |||| || || |||||||| |||||| | | Sbjct 3582907 AACCAGGTCAACTATGCTAACCACCTAGACTACTCCAAATGGAACAACCATCAACGAGGA 3582966 Query 6586 GAATCAAATGGACCAGTTTTCCGTGTGATGGGCCAATTCTTGGGCTATCCATCTTTGATA 6645 ||| | |||| || || ||| |||||||||||||| ||||| ||| |||| | Sbjct 3582967 GAAGCCAATGACCCTGTGTTCAAGGTGATGGGCCAATTTTTGGGTCTCCCAAATTTGTTT 3583026 Query 6646 GAGAGAACGCATGAGTTCTTTGAGAAAAGTCTTGTTTATTACAATGGTAGACCAGACTTG 6705 |||| || ||||||||| ||| || | || ||||| | |||||||||| | Sbjct 3583027 ACTCGAACTCACGAGTTCTTTCGGAAGTCCCTGATCTACTACAAAGATAGACCAGACCTC 3583086 Query 6706 ATGAAGGTAGAAAATGGTGTAGTATTGAATAAAACAGATAATTTAGTTTGCTGGAATGGT 6765 |||| ||| ||| || ||| | ||| |||||| || | ||||| ||||| || Sbjct 3583087 ATGAGGGTTGAATCCGGGAAAGTCATAAATGCAACAGAACATATCGTTTGTTGGAAGGGC 3583146 Query 6766 CAAGCAGGGGGGTTAGAGGGACTGAGACAAAAAGGTTGGAGTATACTCAACTTGTTGGTG 6825 |||||||| ||| ||||||| ||| | |||||||| ||||| | | |||| ||| Sbjct 3583147 CAAGCAGGCGGGCTAGAGGGCCTGCGCCAAAAAGGATGGAGCGTTGTGAACTACCTGGGC 3583206 Query 6826 ATTAGACGTGAGTCCAAAATCCGCAATAC 6854 || ||| || |||| |||| ||||| Sbjct 3583207 ATCGAGCGTCAGGCCAAGATCCAGAATAC 3583235 >seq1480 Length=8353993 Score = 104 bits (114), Expect = 2e-18 Identities = 248/368 (67%), Gaps = 9/368 (2%) Strand=Plus/Minus Query 6538 ATAGCGAACCATATAGATTATGAAAAGTGGAACAATCATCAAAGGAAAGAATCAAATGGA 6597 || || || || || ||||||||||| |||||||| |||||| | ||| | | | Sbjct 8252950 ATCGCTAATCACATCGATTATGAAAAATGGAACAACTTTCAAAGAAGAGAGGCCACTTCC 8252891 Query 6598 CCAGTTTTCCGTGTGATGGGCCAATTCTTGGG-CTATCCA-TCTTTGATAGAGAGAACGC 6655 || |||||| ||||| || ||||| || || ||| | | ||| | | | | |||| Sbjct 8252890 CCCGTTTTCACAGTGATTGGGCAATTTTTTGGACTACCTAATCTAT--TCGCCCGCACGC 8252833 Query 6656 ATGAGTTCTTTGAGAAAAGTCTTGTTTATTACAATGGTAGACCAGACTTGATGAAGGTAG 6715 |||| |||||||| ||| | | ||||| | | ||||| | || ||||| | Sbjct 8252832 ATGAATTCTTTGAAAAATCATTAATATATTATCGAGACCGTCCAGATCTAATAAAGGTCG 8252773 Query 6716 AAAATGGTGTAGTATTGAATA---AAACAGATAATTTAGTTTGCTGGAATGGTCAAGCAG 6772 || |||| || || |||| | | || | | | || |||||||| || || | Sbjct 8252772 AAGATGGGGTGGTCGCGAATGTGGACCCGGAAAGGATGATGTGTTGGAATGGACAGGCCG 8252713 Query 6773 GGGGGTTAGAGGGACTGAGACAAAAAGGTTGGAGTATACTCAACTTGTTGGTGAT-TAGA 6831 | || | || || ||||||||||||| |||||| | ||||| || ||||| || ||| Sbjct 8252712 GAGGACTCGAAGGGTTGAGACAAAAAGGGTGGAGTGTTCTCAATTTATTGGTAATCGAGA 8252653 Query 6832 CGTGAGTCCAAAATCCGCAATACAAGGGTTCAGACATTAGCACAGGGAGACAATCAAGTG 6891 | ||||| || || || || | ||| | || ||||| ||||| |||||||| || Sbjct 8252652 -GGGAGTCACGCATTCGTAACACTAAGGTGCTCACGTTAGCTCAGGGTGACAATCAGGTC 8252594 Query 6892 ATCTGTAC 6899 || || || Sbjct 8252593 ATTTGCAC 8252586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35535026535700