Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_027819.1 Length=10938 Score E Sequences producing significant alignments: (Bits) Value seq296 192 4e-45 seq570 138 8e-29 seq65 129 4e-26 seq1069 95.1 8e-16 seq1791 91.5 1e-14 >seq296 Length=5246318 Score = 192 bits (212), Expect = 4e-45 Identities = 388/573 (68%), Gaps = 6/573 (1%) Strand=Plus/Plus Query 8891 TTCTGGAACATGGTGGATCGCGAACGGGCCAAACATCTGGCGGGGGATTGCGAAATGTGC 8950 |||||||| | || | || || || || ||||||| ||| | ||| | ||||| Sbjct 840560 TTCTGGAATCTTGTTGGCCGAGAGCGTGCTCTACATCTGCAAGGGAAATGCAATATGTGT 840619 Query 8951 ATCTATAACACAATGGGAAAGAAGGAAAAGAAACCCACTGTGGCCGGATTGGCAAAAGGA 9010 ||||||| || ||||| || || |||||||| ||| || || || |||||| ||| Sbjct 840620 CTCTATAATACTATGGGGAAAAAAGAAAAGAAGCCCGGAGTTGCTGGTGAGGCAAAGGGA 840679 Query 9011 TCTCGCACGATTTGGTACATGTGGCTCGGCAGTCGTTTCCTTGAGTATGAGGCATTGGGA 9070 ||||| || || ||||| ||||||||||| || | ||| | ||||| || || ||| Sbjct 840680 TCTCGGACTATCTGGTATATGTGGCTCGGGAGCAGATTCTTGGAGTACGAAGCGCTGGCG 840739 Query 9071 TTCTTGAATGAGGACCACTGGGTTGCCCGTGAAAACTTTCCTGGTGGAGTTGGAGGTGAG 9130 ||| |||| | ||||||||||| |||||| || || || || |||||||| |||| Sbjct 840740 TTCCTGAACGCAGACCACTGGGTCAGCCGTGAGAATTTCCCCGGAGGAGTTGGCGGTGTT 840799 Query 9131 GGAGTCAACTACTTCGGATACTACCTTGAGGAGATTGCTAAGAAAGGGAAGTATCTCGTG 9190 || |||||||| || || | || || |||||||| | ||||| ||||| ||| | Sbjct 840800 GGCGTCAACTATTTTGGCAATTATCTCAAGGAGATTTCCTGCAAAGGAAAGTACCTCTTT 840859 Query 9191 GCGGATGATGTCGCTGGATGGGACACGCGGATAACCCAGGCCGACTTGGATGACGAGGAG 9250 |||||||| | ||||| |||||||| | | | | | || | || |||||||| Sbjct 840860 GCGGATGACATTGCTGGTTGGGACACCAAGGTGAGCTCTGAGGATCTTGAAGACGAGGA- 840918 Query 9251 TACTTCATACTCGAACAGATAA---CCGATCCATACCACCGGAAATTGGTGAAGGCGCTG 9307 ||| | ||| | || | | || ||| | || | || | ||| Sbjct 840919 AACT--CTCCTCACAGAGCTCACCCCCAGTCCCTTTCATAAGGCCCTGATATCGGCAACC 840976 Query 9308 TTCATGTTCGCATACAAGCACATCGTCGCCCTGTTTCCGAGAGACCATCCCCGCTTTGCT 9367 | | | | || ||| || | | ||||| ||||||| || |||| | | || | Sbjct 840977 ATGAAGCTAGCGTACCAGAATGTTGTCGCTATGTTTCCTCGAACCCATGTCAAATATGGT 841036 Query 9368 AGCAACACAGTCATGGACGTTGTGGTTCGCACAGACCAGAGAGGCTCAGGTCAGGTGGTC 9427 ||| || || ||||| ||||| | | || || |||||||| ||||| ||||| ||| Sbjct 841037 AGCGGAACCGTAATGGATGTTGTTGGAAGGACCGATCAGAGAGGTTCAGGCCAGGTTGTC 841096 Query 9428 ACCTATTCGATGAACACCATAACAAACGGAAAA 9460 || || | ||||||| ||||| ||||||||| Sbjct 841097 ACGTACGCCCTGAACACAATAACCAACGGAAAA 841129 >seq570 Length=1853759 Score = 138 bits (152), Expect = 8e-29 Identities = 246/353 (70%), Gaps = 6/353 (2%) Strand=Plus/Minus Query 9788 GAAATCATCGGAAGAAGCAGAATCCAGAAAGGAGGCGTTGTTTCCCTTGGAGACAGCGGG 9847 ||||| ||||| || ||||| ||||||||||||| | || | | | || |||| Sbjct 12498 GAAATAATCGGCAGGAGCAGGCTCCAGAAAGGAGGTCTCGTGAGCTTAGCTGAGAGCGCC 12439 Query 9848 TGTCTCGCCAAAGCGTATGCGCAAATGTGGGCTTTGTATTTCTTCCATCGTCGTGATCTG 9907 ||| | ||||| || || || ||||||||||| | |||||||| || ||||| |||| | Sbjct 12438 TGTATGGCCAAGGCCTACGCACAAATGTGGGCCCTATATTTCTTTCACCGTCGGGATCAG 12379 Query 9908 CGGTTAGGCTTTGCTGCCATAACATCATGCG-TGCCCAAGGATTGGGTTCCAACCGGACG 9966 |||| || || ||| ||||| || ||| | ||| |||||| |||| || || Sbjct 12378 AGGTTGGGGTTCTGTGCTATAACGTCG-GCGATTCCCTCTGATTGGTTTCCTGTGGGGCG 12320 Query 9967 CACCACGTGGTCTGTACACCACGGGAGTGAGTGGATGACGACTGAGGACATGCTATCCGT 10026 || | ||||| | ||||| |||||||||||| ||||| || |||||| || Sbjct 12319 AACATCTTGGTCCATCCACCAGAATCATGAGTGGATGACCACTGATGATATGCTACGAGT 12260 Query 10027 TTGGAACAGAGTTTGGATCGAAAACAACAAGTGGATGTCAGAC--AAGACTCCGGTGTGC 10084 ||||| |||||||| |||||| |||| | | ||| |||| | | || Sbjct 12259 GTGGAATGACGTTTGGATTAGCAACAACCCGTGGGT-TGCGACTAAAGAGCCAGTCATGT 12201 Query 10085 CACTGGGGTGAGGTTCCGTACCTGCACAAGAAACAGGACATAGCTTGTGGAAG 10137 | |||| ||| | |||||| |||| ||||| || |||||||| ||||| || Sbjct 12200 C-GTGGGATGAAATCCCGTACTTGCATAAGAAGCAAGACATAGCGTGTGGTAG 12149 Score = 120 bits (132), Expect = 2e-23 Identities = 190/271 (70%), Gaps = 1/271 (0%) Strand=Plus/Plus Query 8953 CTATAACACAATGGGAAAGAAGGAAAAGAAACCCACTG-TGGCCGGATTGGCAAAAGGAT 9011 || ||| || ||||| || |||||||| ||| || | | || ||| || || || | Sbjct 257980 CTGTAATACCATGGGCAAAAAGGAAAAAAAAACCGGGGGTTGCTGGAGAAGCTAAGGGGT 258039 Query 9012 CTCGCACGATTTGGTACATGTGGCTCGGCAGTCGTTTCCTTGAGTATGAGGCATTGGGAT 9071 | || |||||||||||||||||||| ||| | | ||||| || | ||| || | || | Sbjct 258040 CGCGTACGATTTGGTACATGTGGCTAGGCTGCAGGTTCCTAGAATTTGAAGCTCTTGGCT 258099 Query 9072 TCTTGAATGAGGACCACTGGGTTGCCCGTGAAAACTTTCCTGGTGGAGTTGGAGGTGAGG 9131 || | || | |||||||||||| || || ||||| || || ||||| || || | | Sbjct 258100 TCCTCAACGCTGACCACTGGGTTAGTCGCGAGAACTTCCCGGGAGGAGTAGGGGGAGTTG 258159 Query 9132 GAGTCAACTACTTCGGATACTACCTTGAGGAGATTGCTAAGAAAGGGAAGTATCTCGTGG 9191 | ||||||||||| || | || | | || || || || | || || | | | | | Sbjct 258160 GGGTCAACTACTTTGGGAATTATTTGAAAGACATCGCAAAAAGGGGAAAATTTTTATTCG 258219 Query 9192 CGGATGATGTCGCTGGATGGGACACGCGGAT 9222 | ||||| | |||||||||||||| || || Sbjct 258220 CCGATGACATTGCTGGATGGGACACTCGTAT 258250 >seq65 Length=4361017 Score = 129 bits (142), Expect = 4e-26 Identities = 244/353 (69%), Gaps = 6/353 (2%) Strand=Plus/Minus Query 9788 GAAATCATCGGAAGAAGCAGAATCCAGAAAGGAGGCGTTGTTTCCCTTGGAGACAGCGGG 9847 ||||| ||||| || ||||| |||||||| |||| | || | | | || |||| Sbjct 2220065 GAAATAATCGGCAGGAGCAGGCTCCAGAAAAGAGGTCTCGTGAGCTTAGCTGAGAGCGCC 2220006 Query 9848 TGTCTCGCCAAAGCGTATGCGCAAATGTGGGCTTTGTATTTCTTCCATCGTCGTGATCTG 9907 || | ||||| || || || ||||||||||| | |||||||| || ||||| |||| | Sbjct 2220005 TGCATGGCCAAGGCCTACGCACAAATGTGGGCCCTATATTTCTTTCACCGTCGGGATCAG 2219946 Query 9908 CGGTTAGGCTTTGCTGCCATAACATCATGCG-TGCCCAAGGATTGGGTTCCAACCGGACG 9966 |||| || || ||| ||||| || ||| | ||| |||||| |||| || || Sbjct 2219945 AGGTTGGGGTTCTGTGCTATAACGTCG-GCGATTCCCTCTGATTGGTTTCCTGTGGGGCG 2219887 Query 9967 CACCACGTGGTCTGTACACCACGGGAGTGAGTGGATGACGACTGAGGACATGCTATCCGT 10026 || | ||||| | ||||| |||||||||||| ||||| || |||||| || Sbjct 2219886 AACATCTTGGTCCATCCACCAGAATCATGAGTGGATGACCACTGATGATATGCTACGAGT 2219827 Query 10027 TTGGAACAGAGTTTGGATCGAAAACAACAAGTGGATGTCAGAC--AAGACTCCGGTGTGC 10084 ||||| |||||||| |||||| |||| | | ||| |||| | | || Sbjct 2219826 GTGGAATGACGTTTGGATTAGCAACAACCTGTGGGT-TGCGACTAAAGAGCCAGTCATGT 2219768 Query 10085 CACTGGGGTGAGGTTCCGTACCTGCACAAGAAACAGGACATAGCTTGTGGAAG 10137 | |||| ||| | |||||| |||| ||||| || |||||||| ||||| || Sbjct 2219767 C-GTGGGATGAAATCCCGTACTTGCATAAGAAGCAAGACATAGCGTGTGGTAG 2219716 >seq1069 Length=10974945 Score = 95.1 bits (104), Expect = 8e-16 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 9818 GGAGGCGTTGTTTCCCTTGGAGACAGCGGGTGTCTCGCCAAAGCGTATGCGCAAATGTGG 9877 || ||| |||| ||| | | ||| || | || | | ||||| || || ||||||||| Sbjct 4625964 GGGGGCTTTGTCTCCATGGCAGAGAGTGCCTGCATGGTAAAAGCATACGCCCAAATGTGG 4626023 Query 9878 GCTTTGTATTTCTTCCATCGTCGTGATCTGCGGTTAGGCTTTGCTGCCATAACATCATGC 9937 || |||| || |||||||||||||| || || || || ||||||||||| ||||| ||| Sbjct 4626024 GCCCTGTACTTTTTCCATCGTCGTGACCTCCGTTTGGGGTTTGCTGCCATCACATC-TGC 4626082 Query 9938 -GTGCCCAAGGATTGGGTTCC 9957 ||||| | |||||| |||| Sbjct 4626083 TGTGCCTAGTGATTGGTTTCC 4626103 >seq1791 Length=5469670 Score = 91.5 bits (100), Expect = 1e-14 Identities = 147/207 (71%), Gaps = 7/207 (3%) Strand=Plus/Minus Query 9818 GGAGGCGTTGTTTCCCTTGGAGACAGCGGGTGTCTCGCCAAAGCGTATGCGCAAATGTGG 9877 || ||| |||| ||| | | ||| || | || | | ||||| || || ||||||||| Sbjct 1196128 GGGGGCTTTGTCTCCATGGCAGAGAGTGCCTGCATGGTAAAAGCATACGCCCAAATGTGG 1196069 Query 9878 GCTTTGTATTTCTTCCATCGTCGTGATCTGCGGTTAGGCTTTGCTGCCATAACATCATGC 9937 || || | || |||||||||||||| || || || || ||||||||||| ||||| ||| Sbjct 1196068 GCCCTGCACTTTTTCCATCGTCGTGACCTCCGTTTGGGGTTTGCTGCCATCACATC-TGC 1196010 Query 9938 -GTGCCCAAGGATTGGGTTCCAACCGGACGCACCAC--GTGGTCTGTA---CACCACGGG 9991 ||||| | |||||| |||| ||| ||| | | | || | | ||||| Sbjct 1196009 TGTGCCTAGTGATTGGTTTCCTGGGGGAAGCAACTCTTGAGGAAAGAACCTCACCAAAAC 1195950 Query 9992 AGTGAGTGGATGACGACTGAGGACATG 10018 |||||||||||| ||||| |||||| Sbjct 1195949 CATGAGTGGATGACAACTGATGACATG 1195923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34885444330680