Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_028230.1 Length=12020 Score E Sequences producing significant alignments: (Bits) Value seq1774 111 1e-20 seq1107 111 1e-20 >seq1774 Length=2904822 Score = 111 bits (122), Expect = 1e-20 Identities = 240/354 (68%), Gaps = 10/354 (3%) Strand=Plus/Minus Query 7205 AGCAAAAGAAAGGGAGATGAAAAGAATCGGAAGAtttttttCATTAATGTCTTGGGAATT 7264 ||| || ||| | ||||| || || || ||||||||| | | ||| | ||||| | Sbjct 1686522 AGCCAAGGAACGAGAGATCAAGGAGATGGGGAGATTTTTTGCCATGATGGCGTGGGAGCT 1686463 Query 7265 AAGAGAATATTTTGTTTCTACTGAATATCTGATaaaaaaaTATTATGTTCCATTATTCAA 7324 ||||| | |||||| || ||| || |||| |||| | ||||||||||| ||| | Sbjct 1686462 TAGAGAGTTTTTTGTGGTCACAGAACATTTGATCAAAACCCACTATGTTCCATTGTTCCA 1686403 Query 7325 GGGATTGACAATGGCAGATGGATTAATGACAGTGGTGAAGAAAATGATTGATTCATCATG 7384 || | || |||||||| | | |||||| | |||| ||| | | | ||| | Sbjct 1686402 CGGGCTCACCATGGCAGACGACCACAATACAGTGATAGAGAAGATGCTCGCAGCTTCA-G 1686344 Query 7385 CGGGCAAGGAAATCTAGATTAC---AACACTGTATCAATT--GCCAATCATATAGATTAT 7439 | | || || | || || ||| ||| |||| || ||||| | ||||| Sbjct 1686343 ATGCCCAG--AACCCGGAAGACCCGAACCAAGTA--AATTACGCGAATCACCTGGATTAC 1686288 Query 7440 ACAAAGTGGAACAATCACCAGAGAAGGAAGTCCAATCACCCTGTTTTTACTGTGATGGGA 7499 |||||||||| || |||||| || | || | || |||| || |||| || ||||| Sbjct 1686287 TCAAAGTGGAATAACCACCAGCGAGGAGAGGCGAACGACCCGGTGTTTAGGGTCATGGGT 1686228 Query 7500 CAGTTTTTGGGGTACCCGAACCTGATCACTAGAACTCATGAGTTCTTCGAAAAA 7553 || || ||||| |||||||||| ||||| | || |||||||||||| | ||| Sbjct 1686227 CAATTCCTGGGGCTCCCGAACCTGTTCACTCGGACCCATGAGTTCTTCAAGAAA 1686174 >seq1107 Length=3620151 Score = 111 bits (122), Expect = 1e-20 Identities = 240/354 (68%), Gaps = 10/354 (3%) Strand=Plus/Minus Query 7205 AGCAAAAGAAAGGGAGATGAAAAGAATCGGAAGAtttttttCATTAATGTCTTGGGAATT 7264 ||| || ||| | ||||| || || || ||||||||| | | ||| | ||||| | Sbjct 2215030 AGCCAAGGAACGAGAGATCAAGGAGATGGGGAGATTTTTTGCCATGATGGCGTGGGAGCT 2214971 Query 7265 AAGAGAATATTTTGTTTCTACTGAATATCTGATaaaaaaaTATTATGTTCCATTATTCAA 7324 ||||| | |||||| || ||| || |||| |||| | ||||||||||| ||| | Sbjct 2214970 TAGAGAGTTTTTTGTGGTCACAGAACATTTGATCAAAACCCACTATGTTCCATTGTTCCA 2214911 Query 7325 GGGATTGACAATGGCAGATGGATTAATGACAGTGGTGAAGAAAATGATTGATTCATCATG 7384 || | || |||||||| | | |||||| | |||| ||| | | | ||| | Sbjct 2214910 CGGGCTCACCATGGCAGACGACCACAATACAGTGATAGAGAAGATGCTCGCAGCTTCA-G 2214852 Query 7385 CGGGCAAGGAAATCTAGATTAC---AACACTGTATCAATT--GCCAATCATATAGATTAT 7439 | | || || | || || ||| ||| |||| || ||||| | ||||| Sbjct 2214851 ATGCCCAG--AACCCGGAAGACCCGAACCAAGTA--AATTACGCGAATCACCTTGATTAC 2214796 Query 7440 ACAAAGTGGAACAATCACCAGAGAAGGAAGTCCAATCACCCTGTTTTTACTGTGATGGGA 7499 |||||||||| || |||||| || | || | || |||| || |||| || ||||| Sbjct 2214795 TCAAAGTGGAATAACCACCAGCGAGGAGAGGCGAACGACCCGGTGTTTAGGGTCATGGGT 2214736 Query 7500 CAGTTTTTGGGGTACCCGAACCTGATCACTAGAACTCATGAGTTCTTCGAAAAA 7553 || || ||||| |||||||||| ||||| | || |||||||||||| | ||| Sbjct 2214735 CAATTCCTGGGGCTCCCGAACCTGTTCACTCGGACCCATGAGTTCTTCAAGAAA 2214682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 38347749482560