Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_028235.1 Length=12994 Score E Sequences producing significant alignments: (Bits) Value seq1774 82.4 6e-12 seq1107 82.4 6e-12 seq1594 78.8 8e-11 >seq1774 Length=2904822 Score = 82.4 bits (90), Expect = 6e-12 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 8243 AGCCAAAGAAAGAGAAATGAAGAGAATTGGGAGAtttttttCATTAATGTCTTGGGAGTT 8302 |||||| ||| |||| || ||| || |||||||||||| | | ||| | |||||| | Sbjct 1686522 AGCCAAGGAACGAGAGATCAAGGAGATGGGGAGATTTTTTGCCATGATGGCGTGGGAGCT 1686463 Query 8303 GAGAGAATATTTTGTATATACAGAGTATTTAATAAAGGAGTATTTTGTTCCATTATTCCA 8362 ||||| | |||||| ||||| |||| || || | | ||||||||| ||||| Sbjct 1686462 TAGAGAGTTTTTTGTGGTCACAGAACATTTGATCAAAACCCACTATGTTCCATTGTTCCA 1686403 Query 8363 TGGCTTGACCATGGCAGATGACC 8385 || | ||||||||||| |||| Sbjct 1686402 CGGGCTCACCATGGCAGACGACC 1686380 >seq1107 Length=3620151 Score = 82.4 bits (90), Expect = 6e-12 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 8243 AGCCAAAGAAAGAGAAATGAAGAGAATTGGGAGAtttttttCATTAATGTCTTGGGAGTT 8302 |||||| ||| |||| || ||| || |||||||||||| | | ||| | |||||| | Sbjct 2215030 AGCCAAGGAACGAGAGATCAAGGAGATGGGGAGATTTTTTGCCATGATGGCGTGGGAGCT 2214971 Query 8303 GAGAGAATATTTTGTATATACAGAGTATTTAATAAAGGAGTATTTTGTTCCATTATTCCA 8362 ||||| | |||||| ||||| |||| || || | | ||||||||| ||||| Sbjct 2214970 TAGAGAGTTTTTTGTGGTCACAGAACATTTGATCAAAACCCACTATGTTCCATTGTTCCA 2214911 Query 8363 TGGCTTGACCATGGCAGATGACC 8385 || | ||||||||||| |||| Sbjct 2214910 CGGGCTCACCATGGCAGACGACC 2214888 >seq1594 Length=5600000 Score = 78.8 bits (86), Expect = 8e-11 Identities = 106/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 8481 AAATGGAACAATCATCAACGATACGAATCTAATTGTCATATTTTTAAAGTTATGGGTCAA 8540 ||||||||||| ||||||||| ||| | ||| | | | || || || ||||| ||| Sbjct 3582943 AAATGGAACAACCATCAACGAGGAGAAGCCAATGACCCTGTGTTCAAGGTGATGGGCCAA 3583002 Query 8541 TGTTTTGGTCTTCCCAATTTGTTTTTACGTTCTCATGAATTTTTTCAAAAAAGCCTGATT 8600 | ||| ||||| || ||||||||| || |||| || || |||| || |||||| Sbjct 3583003 TTTTTGGGTCTCCCAAATTTGTTTACTCGAACTCACGAGTTCTTTCGGAAGTCCCTGATC 3583062 Query 8601 TATTACAACCAACGACCTGATCTGATGA 8628 || ||||| | |||| || || |||| Sbjct 3583063 TACTACAAAGATAGACCAGACCTCATGA 3583090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41464464101720