Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_028246.1 Length=14627 Score E Sequences producing significant alignments: (Bits) Value seq1774 113 4e-21 seq1107 109 5e-20 >seq1774 Length=2904822 Score = 113 bits (124), Expect = 4e-21 Identities = 345/531 (65%), Gaps = 8/531 (2%) Strand=Plus/Minus Query 9798 GGTAGAtttttttCATTGATGTCATATGACATGAGGGATTACTTCGTAATGACTGAATAT 9857 || ||||||||| | ||||| | | || | || || | || || | || ||| || Sbjct 1686494 GGGAGATTTTTTGCCATGATGGCGTGGGAGCTTAGAGAGTTTTTTGTGGTCACAGAACAT 1686435 Query 9858 TTGATaaaaaaaTATTATGTACCATTATTCAAAGGATTGACCATGGCTGATGATCAAAAT 9917 ||||| |||| | ||||| ||||| ||| | || | |||||||| || || || ||| Sbjct 1686434 TTGATCAAAACCCACTATGTTCCATTGTTCCACGGGCTCACCATGGCAGACGACCACAAT 1686375 Query 9918 ACAGTAGTAAAGAAAATGCTCAAAGTTTCTAAAGGTCAAGGGCTAACAGATTATAAAGAG 9977 ||||| || |||| |||||| || ||| | | || | ||| || | Sbjct 1686374 ACAGTGATAGAGAAGATGCTCGCAGCTTCAGATGCCCAGAACCCGGAAGACCCGAACCAA 1686315 Query 9978 ATAACATTTGCTAATCACTTGGATTATGAGAAGTGGAATAATTATCAAAGGAGGGAATCA 10037 ||| | || |||||| ||||||| ||||||||||| | || | | || | Sbjct 1686314 GTAAATTACGCGAATCACCTGGATTACTCAAAGTGGAATAACCACCAGCGAGGAGAGGCG 1686255 Query 10038 AACGGTCCGGTGTTCAGAGTAATGGGCCAGTTTTTAGGTCTACCTCACTTAATAGAAAGA 10097 |||| |||||||| || || ||||| || || | || || || || | | | Sbjct 1686254 AACGACCCGGTGTTTAGGGTCATGGGTCAATTCCTGGGGCTCCCGAACCTGTTCACTCGG 1686195 Query 10098 ACTCACGAGTTCTTTGAAAATAGTCTAATTTATTACAATGGCCGACCTGATTTAATGTAT 10157 || || |||||||| | || || | |||||||| | ||| || || | ||| Sbjct 1686194 ACCCATGAGTTCTTCAAGAAATCCCTTGTCTATTACAAAGACCGGCCGGACCTGATGAGA 1686135 Query 10158 GTCAGAAAT----AAAGTTGTACACTCCAAAGGTGATGACATCGTTTGCTGGGAAGGACA 10213 || | ||| |||| | || | | | | | |||||||||||||||| || || Sbjct 1686134 GT--GGAATCTGGAAAGGTCATCAATGCCACCGAAA--ACATCGTTTGCTGGGAGGGCCA 1686079 Query 10214 AAAAGGAGGATTAGAGGGTCTAAGACAAAAAGGATGGAGTGTCCTTAATTGCCTAATGAT 10273 | || ||| | || || ||| |||| || ||||||||||| | || | ||| ||| Sbjct 1686078 AGCCGGCGGACTGGAAGGGCTACGACAGAAGGGATGGAGTGTGGTCAACTACCTTGGGAT 1686019 Query 10274 TGAGAGAGAATCAAAGATTCGGAACACCCAAATCGGCTTATTGGCCCAGGG 10324 || || || ||||||| |||||||| || ||| | || |||||||| Sbjct 1686018 CGAAAGGCAAGCAAAGATCCGGAACACGCACATCAAATGTTTAGCCCAGGG 1685968 >seq1107 Length=3620151 Score = 109 bits (120), Expect = 5e-20 Identities = 344/531 (65%), Gaps = 8/531 (2%) Strand=Plus/Minus Query 9798 GGTAGAtttttttCATTGATGTCATATGACATGAGGGATTACTTCGTAATGACTGAATAT 9857 || ||||||||| | ||||| | | || | || || | || || | || ||| || Sbjct 2215002 GGGAGATTTTTTGCCATGATGGCGTGGGAGCTTAGAGAGTTTTTTGTGGTCACAGAACAT 2214943 Query 9858 TTGATaaaaaaaTATTATGTACCATTATTCAAAGGATTGACCATGGCTGATGATCAAAAT 9917 ||||| |||| | ||||| ||||| ||| | || | |||||||| || || || ||| Sbjct 2214942 TTGATCAAAACCCACTATGTTCCATTGTTCCACGGGCTCACCATGGCAGACGACCACAAT 2214883 Query 9918 ACAGTAGTAAAGAAAATGCTCAAAGTTTCTAAAGGTCAAGGGCTAACAGATTATAAAGAG 9977 ||||| || |||| |||||| || ||| | | || | ||| || | Sbjct 2214882 ACAGTGATAGAGAAGATGCTCGCAGCTTCAGATGCCCAGAACCCGGAAGACCCGAACCAA 2214823 Query 9978 ATAACATTTGCTAATCACTTGGATTATGAGAAGTGGAATAATTATCAAAGGAGGGAATCA 10037 ||| | || |||||| | ||||| ||||||||||| | || | | || | Sbjct 2214822 GTAAATTACGCGAATCACCTTGATTACTCAAAGTGGAATAACCACCAGCGAGGAGAGGCG 2214763 Query 10038 AACGGTCCGGTGTTCAGAGTAATGGGCCAGTTTTTAGGTCTACCTCACTTAATAGAAAGA 10097 |||| |||||||| || || ||||| || || | || || || || | | | Sbjct 2214762 AACGACCCGGTGTTTAGGGTCATGGGTCAATTCCTGGGGCTCCCGAACCTGTTCACTCGG 2214703 Query 10098 ACTCACGAGTTCTTTGAAAATAGTCTAATTTATTACAATGGCCGACCTGATTTAATGTAT 10157 || || |||||||| | || || | |||||||| | ||| || || | ||| Sbjct 2214702 ACCCATGAGTTCTTCAAGAAATCCCTTGTCTATTACAAAGACCGGCCGGACCTGATGAGA 2214643 Query 10158 GTCAGAAAT----AAAGTTGTACACTCCAAAGGTGATGACATCGTTTGCTGGGAAGGACA 10213 || | ||| |||| | || | | | | | |||||||||||||||| || || Sbjct 2214642 GT--GGAATCTGGAAAGGTCATCAATGCCACCGAAA--ACATCGTTTGCTGGGAGGGCCA 2214587 Query 10214 AAAAGGAGGATTAGAGGGTCTAAGACAAAAAGGATGGAGTGTCCTTAATTGCCTAATGAT 10273 | || ||| | || || ||| |||| || ||||||||||| | || | ||| ||| Sbjct 2214586 AGCCGGCGGACTGGAAGGGCTACGACAGAAGGGATGGAGTGTGGTCAACTACCTTGGGAT 2214527 Query 10274 TGAGAGAGAATCAAAGATTCGGAACACCCAAATCGGCTTATTGGCCCAGGG 10324 || || || ||||||| |||||||| || ||| | || |||||||| Sbjct 2214526 CGAAAGGCAAGCAAAGATCCGGAACACGCACATCAAATGTTTAGCCCAGGG 2214476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 46686685513950