Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_028255.1 Length=11003 Score E Sequences producing significant alignments: (Bits) Value seq1594 116 3e-22 seq1942 80.6 2e-11 >seq1594 Length=5600000 Score = 116 bits (128), Expect = 3e-22 Identities = 315/475 (66%), Gaps = 18/475 (4%) Strand=Plus/Plus Query 6207 GGAAGATTCTTTTCCTTGATGTCTTGGAAATTACGTGAATATTTTGTAATCACGGAATAT 6266 || |||||||| | ||||| | ||| |||| || || | || || |||| || | Sbjct 3582733 GGCAGATTCTTCGCAATGATGGCATGGGAATTCCGGGAGTTCTTCGTTGTCACCGAGCAC 3582792 Query 6267 CTTATCAAAACACACTTTGTCCCCATGTTCAAGGGACTAACCATGGCAGATGATC-TAAC 6325 || ||||| || |||| ||| ||| |||| | || ||||||||||| || || | |||| Sbjct 3582793 CTAATCAAGACCCACTATGTGCCCTTGTTTCATGGCCTAACCATGGCCGACGACCATAAC 3582852 Query 6326 TGCTGTCATCaaaaaaaTGTTGGATACATCCTCAGGTCAAGGATTGGACAATTACGAGTC 6385 | || ||| | || ||||| | | | ||| | ||| || || | | | Sbjct 3582853 ACC-GTGATCGAGAAGATGTTAGCTGCCTCCGATGCACAAAATCCAGAGGATCCCAA--C 3582909 Query 6386 CATTTG---TATCGCGAATCACATTGATTATGAGAAATGGAACAACCATCAACGCAAGGA 6442 || | ||| || || ||| | || || |||||||||||||||||||| || Sbjct 3582910 CAGGTCAACTAT-GCTAACCACCTAGACTACTCCAAATGGAACAACCATCAACGAGGAGA 3582968 Query 6443 ATCCAATGGGCCTGTATTTCGTGTGATGGGACAGTTCCTAGGATACCCAAACCTGATTGA 6502 | |||||| ||||| || |||||||| || || | || |||||| || || Sbjct 3582969 AGCCAATGACCCTGTGTTCAAGGTGATGGGCCAATTTTTGGGTCTCCCAAATTTGTTTAC 3583028 Query 6503 GAGGACACACGAATTCTTCGAGAAGAGCTTGATCTACTATAATGGACGTCCAGACTTAAT 6562 | || ||||| ||||| |||| | |||||||||| || | | |||||| | || Sbjct 3583029 TCGAACTCACGAGTTCTTTCGGAAGTCCCTGATCTACTACAAAGATAGACCAGACCTCAT 3583088 Query 6563 GCAGGT----CTCGGGAAATACCCTCAT-CAACAGGTCTAATCAATTGGTCTGCTGGCAG 6617 | ||| ||||||| | || |||||| | || | || || ||| || Sbjct 3583089 GAGGGTTGAATCCGGGAAAGTCATAAATGCAACAG-----AACATATCGTTTGTTGGAAG 3583143 Query 6618 GGACAAGCAGGAGGGCTGGAAGGCCTTCGTCAGAAAGGATGGAGCATCCTGAACT 6672 || |||||||| ||||| || ||||| || || |||||||||||| | |||||| Sbjct 3583144 GGCCAAGCAGGCGGGCTAGAGGGCCTGCGCCAAAAAGGATGGAGCGTTGTGAACT 3583198 Score = 80.6 bits (88), Expect = 2e-11 Identities = 95/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 5883 ACATGGCCTACAGCTGCTCAAGTTCAAGACTTCGGAGACCTGTGGCATGAACTTCCTTTA 5942 || |||||| ||||||| | | |||| | || ||| | |||||| | || |||||| Sbjct 5061815 ACCTGGCCTTCAGCTGCCCGGATCCAAGCAGTAGGGGACATCTGGCATAAGCTCCCTTTA 5061874 Query 5943 ACCAAATGTTTTGACATCCCTGACTTAATAGACCCCTCAATCATTTATTCGGATAAAAGT 6002 | | ||||||||||| |||| |||| || ||||| ||||||| || | || ||| Sbjct 5061875 ATCCAATGTTTTGACGTCCCAGACTACATCGACCCAACAATCATCTACGCCGACAAACAC 5061934 Query 6003 CACTCAATG 6011 ||||||||| Sbjct 5061935 CACTCAATG 5061943 >seq1942 Length=1338801 Score = 80.6 bits (88), Expect = 2e-11 Identities = 95/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 5883 ACATGGCCTACAGCTGCTCAAGTTCAAGACTTCGGAGACCTGTGGCATGAACTTCCTTTA 5942 || |||||| ||||||| | | |||| | || ||| | |||||| | || |||||| Sbjct 906443 ACCTGGCCTTCAGCTGCCCGGATCCAAGCAGTAGGGGACATCTGGCATAAGCTCCCTTTA 906502 Query 5943 ACCAAATGTTTTGACATCCCTGACTTAATAGACCCCTCAATCATTTATTCGGATAAAAGT 6002 | | ||||||||||| |||| |||| || ||||| ||||||| || | || ||| Sbjct 906503 ATCCAATGTTTTGACGTCCCAGACTACATCGACCCAACAATCATCTACGCCGACAAACAC 906562 Query 6003 CACTCAATG 6011 ||||||||| Sbjct 906563 CACTCAATG 906571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35093438632780