Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_030401.1 Length=10158 Score E Sequences producing significant alignments: (Bits) Value seq570 188 5e-44 seq296 188 5e-44 seq65 113 3e-21 seq1069 100 2e-17 seq1791 91.5 1e-14 >seq570 Length=1853759 Score = 188 bits (208), Expect = 5e-44 Identities = 357/520 (69%), Gaps = 9/520 (2%) Strand=Plus/Plus Query 8799 TAACACGATGGGAAAAAAGGAAAAGAAA-CCAGCATCAATGGGAGTGGCCAAAGGCTCGA 8857 ||| || ||||| ||||||||||| ||| || | |||| || || || ||| Sbjct 257983 TAATACCATGGGCAAAAAGGAAAAAAAAACCGGGGGTTGCTGGAGAAGCTAAGGGGTCGC 258042 Query 8858 GGACAATCTGGTATATGTGGCTAGGATCAAGGTTCTTGGAATATGAAGCTCTTGGGTTCT 8917 | || || ||||| ||||||||||| | |||||| | |||| |||||||||||| ||| Sbjct 258043 GTACGATTTGGTACATGTGGCTAGGCTGCAGGTTCCTAGAATTTGAAGCTCTTGGCTTCC 258102 Query 8918 TGAATGAGGACCATTGGGTTTCCAGGGAGAACTTGGCATGTGGTGTAGGAGGTGTTGGAG 8977 | || | ||||| |||||| | |||||||| | | || ||||| || ||||| | Sbjct 258103 TCAACGCTGACCACTGGGTTAGTCGCGAGAACTTCCCGGGAGGAGTAGGGGGAGTTGGGG 258162 Query 8978 TTAACTATTTTGGCTATTATCTGCAAGAAATATCCAAGAAAGGGAAGTTCTTCATT-GCC 9036 | ||||| ||||| ||||| || |||| || ||| || ||||| | || ||| ||| Sbjct 258163 TCAACTACTTTGGGAATTATTTGAAAGACAT-CGCAAAAAGGGGAAAATTTTTATTCGCC 258221 Query 9037 GACGACATTGCTGGCTGGGACACCAGGAT---CAATGAAAGTGATCTGGCTGATGAGGAA 9093 || ||||||||||| |||||||| | || | |||| ||||||| || || ||| Sbjct 258222 GATGACATTGCTGGATGGGACACTCGTATTAGCTCTGAA---GATCTGGAGGACGAAGAA 258278 Query 9094 CATCTCATCATGTCGATGATTTCAGACACAAGACATCGGGCCTTAGCCACGGCGGTTTTC 9153 ||| | | | | || | || | || || || || | || | Sbjct 258279 ACTCTTCTAACGGAGTTGGCTATTGATCCTTTCCACCGTGCACTAATATCCGCCACCATG 258338 Query 9154 AAGTTTGCTTACCAGAACATAGTTGCTCTTTTCCCTAGAAATCACCCCGGGTTCGGAAGT 9213 | | |||||||||||||| |||| | ||||| ||| || | | || ||| Sbjct 258339 AGACTCGCTTACCAGAACATCGTTGTCATGTTCCCACGAACCCATTCTAAATATGGCAGT 258398 Query 9214 GGGACTGTTATGGATGTCGTCGCTAGAACAGATCAACGAGGATCAGGACAAGTTGTGACC 9273 || ||||| |||||||| || | |||| || ||||| ||||| || ||||| ||||| Sbjct 258399 GGAACTGTGATGGATGTTGTTGGCAGAAGGGACCAACGCGGATCGGGCCAAGTCGTGACA 258458 Query 9274 TACGCCTTAAACACCATCACCAATGCCAAGATTCAGCTTG 9313 |||||| |||||||||| ||||||| ||| | ||| ||| Sbjct 258459 TACGCCCTAAACACCATAACCAATGGAAAGGTCCAGGTTG 258498 Score = 113 bits (124), Expect = 3e-21 Identities = 182/262 (69%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 9626 AAAATGAGGTCATCGGGCGAGGTAGGATTCAGAAGGGTGGTCTGGTTACCATTGCGGATA 9685 || |||| | ||||| | | ||| | ||||| || ||||| || | | | || || | Sbjct 12503 AAGATGAAATAATCGGCAGGAGCAGGCTCCAGAAAGGAGGTCTCGTGAGCTTAGCTGAGA 12444 Query 9686 GCGCGTGCCTGGCAAAAGCCTATGGTCAGATGTGGGCCTTGTACTTCTTCCACCGTCGAG 9745 |||| || |||| || ||||| | || ||||||||| | || ||||| |||||||| | Sbjct 12443 GCGCCTGTATGGCCAAGGCCTACGCACAAATGTGGGCCCTATATTTCTTTCACCGTCGGG 12384 Query 9746 ACCTACGAATGGCTTTCATGGCAATAACATCAAGTGTCCCCGTGGACTGGTTTCCAGAAG 9805 | | | ||| ||| || ||||| || | ||| || |||||||| | | Sbjct 12383 ATCAGAGGTTGGGGTTCTGTGCTATAACGTCGGCGATTCCCTCTGATTGGTTTCCTGTGG 12324 Query 9806 GGAGGACCTCATGGTCGATTCATCAGAATAAGGAGTGGATGACAACGGAAGACATGTTGA 9865 || | || || ||||| || || |||||| | ||||||||||| || || || ||| | Sbjct 12323 GGCGAACATCTTGGTCCATCCACCAGAATCATGAGTGGATGACCACTGATGATATGCTAC 12264 Query 9866 GAGTGTGGAACACGGTTTGGAT 9887 |||||||||| |||||||| Sbjct 12263 GAGTGTGGAATGACGTTTGGAT 12242 Score = 89.7 bits (98), Expect = 3e-14 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 8335 CATCCATACCAGTCCTTCCGGTATGTTGGTTCTTACGTTACCGATGACATCAACCCTGGC 8394 ||||| || || |||||||||| | ||||| | || || || || | || ||| Sbjct 254130 CATCCCTATAAGAGCTTCCGGTATTTCGGTTCCTTTGTAACTGACGATGTAAAGGTTGGG 254189 Query 8395 GGACAGACCGTAAATCCCTTAATGCGAAAGATGATGTGGCCATGGGAATTGGTTGGAGGA 8454 || || | ||||| ||| |||| || || ||||||||||||||||| | || Sbjct 254190 GGCCAAGCGGTAAACCCCCTAATTCGCAAACTGATGTGGCCATGGGAAACAATCACTGGT 254249 Query 8455 GTGGTCAACTTTATGATGACGGATGTGTCAACATACGCTCAGCAGAAAGTTTTGAGAGAG 8514 || || ||| | |||||||| ||||| ||||| ||||||| ||||| | || || Sbjct 254250 GTTGTTGGCTTCCTTATGACGGACGTGTCCACATATTCTCAGCAAAAAGTGTCAAGGGAA 254309 Query 8515 AAAGTGGACACGCTGTCA 8532 ||||| |||| |||||| Sbjct 254310 AAAGTTGACA--CTGTCA 254325 >seq296 Length=5246318 Score = 188 bits (208), Expect = 5e-44 Identities = 355/517 (69%), Gaps = 4/517 (1%) Strand=Plus/Plus Query 8782 TGCAGGATGTGTGTGTATAACACGATGGGAAAAAAGGAAAAGAAACCAGCATCAATGGGA 8841 |||| |||||| | ||||| || ||||| ||||| |||||||| || | | || Sbjct 840608 TGCAATATGTGTCTCTATAATACTATGGGGAAAAAAGAAAAGAAGCCCGGAGTTGCTGGT 840667 Query 8842 GTGGCCAAAGGCTCGAGGACAATCTGGTATATGTGGCTAGGATCAAGGTTCTTGGAATAT 8901 | ||| || || || |||| ||||||||||||||||| || || |||||||| || Sbjct 840668 GAGGCAAAGGGATCTCGGACTATCTGGTATATGTGGCTCGGGAGCAGATTCTTGGAGTAC 840727 Query 8902 GAAGCTCTTGGGTTCTTGAATGAGGACCATTGGGTTTCCAGGGAGAACTTGGCATGTGGT 8961 ||||| || | |||| |||| | ||||| ||||| | | ||||| || | | || Sbjct 840728 GAAGCGCTGGCGTTCCTGAACGCAGACCACTGGGTCAGCCGTGAGAATTTCCCCGGAGGA 840787 Query 8962 GTAGGAGGTGTTGGAGTTAACTATTTTGGCTATTATCTGCAAGAAATATCCAAGAAAGGG 9021 || || |||||||| || |||||||||||| ||||||| | || || ||| ||||| Sbjct 840788 GTTGGCGGTGTTGGCGTCAACTATTTTGGCAATTATCTCAAGGAGATTTCCTGCAAAGGA 840847 Query 9022 AAGTTCTTCATTGCCGACGACATTGCTGGCTGGGACACCAGGATCA-ATGAAAGTGATCT 9080 |||| | || |||| || ||||||||||| |||||||||| | | | | || ||||| Sbjct 840848 AAGTACCTCTTTGCGGATGACATTGCTGGTTGGGACACCAAGGTGAGCTCTGAG-GATCT 840906 Query 9081 GGCTGATGAGGAACATCTCATCATGTCGATGA-TTTCAGACACAAGACATCGGGCCTTAG 9139 | || |||||| |||| ||| | | | ||| | | ||| |||| | Sbjct 840907 TGAAGACGAGGAAACTCTCCTCACAGAGCTCACCCCCAGTC-CCTTTCATAAGGCCCTGA 840965 Query 9140 CCACGGCGGTTTTCAAGTTTGCTTACCAGAACATAGTTGCTCTTTTCCCTAGAAATCACC 9199 |||| | ||| | || |||||||| | || ||| | || ||| ||| || Sbjct 840966 TATCGGCAACCATGAAGCTAGCGTACCAGAATGTTGTCGCTATGTTTCCTCGAACCCATG 841025 Query 9200 CCGGGTTCGGAAGTGGGACTGTTATGGATGTCGTCGCTAGAACAGATCAACGAGGATCAG 9259 | | || || || || || |||||||| || | || || ||||| |||| |||| Sbjct 841026 TCAAATATGGTAGCGGAACCGTAATGGATGTTGTTGGAAGGACCGATCAGAGAGGTTCAG 841085 Query 9260 GACAAGTTGTGACCTACGCCTTAAACACCATCACCAA 9296 | || ||||| || |||||| | ||||| || ||||| Sbjct 841086 GCCAGGTTGTCACGTACGCCCTGAACACAATAACCAA 841122 Score = 93.3 bits (102), Expect = 3e-15 Identities = 260/386 (67%), Gaps = 16/386 (4%) Strand=Plus/Plus Query 2638 TGTGGGAAGGCAATCGGATTCCAGTATGACTTCGTCGGATTTAGAAGAGCCGTGTATGGG 2697 ||||| ||||| || ||| || | | || || |||||| | | | | |||||||| Sbjct 814992 TGTGGCAAGGCGATATCATTTCAATTCAAATTTGTTGGATTTCGGCGTGGCCTGTATGGG 815051 Query 2698 TCAAATGTGCAA-TTAAAGATCTCGAAAAAGGTCTCAATAGAATGCCCCACGTATTTAGC 2756 ||||||||||| || || | |||||| | || || | ||||| ||||| | || Sbjct 815052 TCAAATGTGCAGGTTGCAGTT-TCGAAACAAGTATCGCATCATTGCCCTACGTACCTGGC 815110 Query 2757 TGGAATGGCTGTCAAGAACGATCGGACTGTGTTTACTGATGGAATGTTTTGGATGTCATC 2816 ||| | || |||||||||||||| || | | |||||||||||||| |||||| | Sbjct 815111 TGGGGTTGCCGTCAAGAACGATCGCACCATCATAACTGATGGAATGTTCTGGATGGAA-- 815168 Query 2817 AAGGAAA--GATAA--CGACTCATATGCCATTGACGAATTGGAGATGGAACAATCGCATA 2872 | |||| | || ||| || | | |||| | | || ||| || || || Sbjct 815169 AGTGAAATTGTCAATGGGACCCA-ACG-GATTGTTGTGCTTGAAATGCTGCAGTCTCACC 815226 Query 2873 GGTGTGTATGGCC--CAACCAATACACCCCTGACATGGTTCAAGAT-CCACGTGATAATG 2929 |||| | ||||| |||| ||||| || ||| | | ||| ||||| || Sbjct 815227 GGTGCCTGTGGCCATCAAC--GTACACTCCCGACGCCTTGCCTGATCCCACG-GACCTCA 815283 Query 2930 ATCTGTTCGTTCCCCCGGAATGGGGAGGGCCTCGATCAAAGGCCAACCACATCCCCGGAT 2989 | | ||| | ||||| | ||||||||||| ||||||||||| |||||||| || | Sbjct 815284 ACATTTTCATCCCCCCCGTCTGGGGAGGGCCCATCTCAAAGGCCAATCACATCCCAGGCT 815343 Query 2990 ACAAAATGCAGATAAGCTTTCCATGG 3015 |||| ||||||| ||| |||||| Sbjct 815344 ACAAGATGCAGACGGACTTCCCATGG 815369 >seq65 Length=4361017 Score = 113 bits (124), Expect = 3e-21 Identities = 182/262 (69%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 9626 AAAATGAGGTCATCGGGCGAGGTAGGATTCAGAAGGGTGGTCTGGTTACCATTGCGGATA 9685 || |||| | ||||| | | ||| | ||||| | ||||| || | | | || || | Sbjct 2220070 AAGATGAAATAATCGGCAGGAGCAGGCTCCAGAAAAGAGGTCTCGTGAGCTTAGCTGAGA 2220011 Query 9686 GCGCGTGCCTGGCAAAAGCCTATGGTCAGATGTGGGCCTTGTACTTCTTCCACCGTCGAG 9745 |||| ||| |||| || ||||| | || ||||||||| | || ||||| |||||||| | Sbjct 2220010 GCGCCTGCATGGCCAAGGCCTACGCACAAATGTGGGCCCTATATTTCTTTCACCGTCGGG 2219951 Query 9746 ACCTACGAATGGCTTTCATGGCAATAACATCAAGTGTCCCCGTGGACTGGTTTCCAGAAG 9805 | | | ||| ||| || ||||| || | ||| || |||||||| | | Sbjct 2219950 ATCAGAGGTTGGGGTTCTGTGCTATAACGTCGGCGATTCCCTCTGATTGGTTTCCTGTGG 2219891 Query 9806 GGAGGACCTCATGGTCGATTCATCAGAATAAGGAGTGGATGACAACGGAAGACATGTTGA 9865 || | || || ||||| || || |||||| | ||||||||||| || || || ||| | Sbjct 2219890 GGCGAACATCTTGGTCCATCCACCAGAATCATGAGTGGATGACCACTGATGATATGCTAC 2219831 Query 9866 GAGTGTGGAACACGGTTTGGAT 9887 |||||||||| |||||||| Sbjct 2219830 GAGTGTGGAATGACGTTTGGAT 2219809 >seq1069 Length=10974945 Score = 100 bits (110), Expect = 2e-17 Identities = 148/208 (71%), Gaps = 5/208 (2%) Strand=Plus/Plus Query 9674 CCATTGCGGATAGCGCGTGCCTGGCAAAAGCCTATGGTCAGATGTGGGCCTTGTACTTCT 9733 |||| || || || || ||| ||| |||||| || | || ||||||||| ||||||| | Sbjct 4625977 CCATGGCAGAGAGTGCCTGCATGGTAAAAGCATACGCCCAAATGTGGGCCCTGTACTTTT 4626036 Query 9734 TCCACCGTCGAGACCTACGAATGGCTTTCATGGCAATAACATCAAGTGTCCCCGTGGACT 9793 |||| ||||| ||||| || ||| || || || ||||| ||| || || | Sbjct 4626037 TCCATCGTCGTGACCTCCGTTTGGGGTTTGCTGCCATCACATCTGCTGTGCCTAGTGATT 4626096 Query 9794 GGTTTCCAGAAGGGAGGACCTC---ATGGTCGA--TTCATCAGAATAAGGAGTGGATGAC 9848 ||||||| || || | | || | || || |||| || || | ||||||||||| Sbjct 4626097 GGTTTCCTGAGGGAAAAATTTCTAGAGGGAAGAACTTCACCAAAACCATGAGTGGATGAC 4626156 Query 9849 AACGGAAGACATGTTGAGAGTGTGGAAC 9876 ||| || ||||||||| | ||||||||| Sbjct 4626157 AACTGATGACATGTTGCGGGTGTGGAAC 4626184 >seq1791 Length=5469670 Score = 91.5 bits (100), Expect = 1e-14 Identities = 145/208 (70%), Gaps = 5/208 (2%) Strand=Plus/Minus Query 9674 CCATTGCGGATAGCGCGTGCCTGGCAAAAGCCTATGGTCAGATGTGGGCCTTGTACTTCT 9733 |||| || || || || ||| ||| |||||| || | || ||||||||| || |||| | Sbjct 1196115 CCATGGCAGAGAGTGCCTGCATGGTAAAAGCATACGCCCAAATGTGGGCCCTGCACTTTT 1196056 Query 9734 TCCACCGTCGAGACCTACGAATGGCTTTCATGGCAATAACATCAAGTGTCCCCGTGGACT 9793 |||| ||||| ||||| || ||| || || || ||||| ||| || || | Sbjct 1196055 TCCATCGTCGTGACCTCCGTTTGGGGTTTGCTGCCATCACATCTGCTGTGCCTAGTGATT 1195996 Query 9794 GGTTTCCAGAAGGGAGGACCTCATGGTCGAT-----TCATCAGAATAAGGAGTGGATGAC 9848 ||||||| | || || | ||| || | ||| || || | ||||||||||| Sbjct 1195995 GGTTTCCTGGGGGAAGCAACTCTTGAGGAAAGAACCTCACCAAAACCATGAGTGGATGAC 1195936 Query 9849 AACGGAAGACATGTTGAGAGTGTGGAAC 9876 ||| || ||||||||| | ||||||||| Sbjct 1195935 AACTGATGACATGTTGCGGGTGTGGAAC 1195908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 32389512705480