Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_031236.1 Length=11165 Score E Sequences producing significant alignments: (Bits) Value seq1774 95.1 9e-16 seq1107 91.5 1e-14 seq1594 87.8 1e-13 >seq1774 Length=2904822 Score = 95.1 bits (104), Expect = 9e-16 Identities = 301/462 (65%), Gaps = 6/462 (1%) Strand=Plus/Minus Query 6282 GGGAAGATTCTTCTCCCTGCTTTCTTGGGTACTTAGAGAGTATTTTGTCGTAACGGAATA 6341 ||| ||||| || || || | | |||| |||||||||| |||||| || || ||| | Sbjct 1686495 GGGGAGATTTTTTGCCATGATGGCGTGGGAGCTTAGAGAGTTTTTTGTGGTCACAGAACA 1686436 Query 6342 TCTTATAAAGATCCATTTCCTCCCTCTTTTTAAGGGACTGACTATGGCTGATGACTTGAC 6401 | | || || | ||| | | || | || | || || || ||||| || ||| | Sbjct 1686435 TTTGATCAAAACCCACTATGTTCCATTGTTCCACGGGCTCACCATGGCAGACGACCACAA 1686376 Query 6402 TACCCTCACCAAGAAGATGCTGGACACCTCCTCGGGTCAAGGGTTAAGTGGATACGA-CA 6460 ||| | | |||||||||| | || || | | | || | || ||| | Sbjct 1686375 TACAGTGATAGAGAAGATGCTCG-CAGCTTCAGATGCCCAGAACCCGGAAGACCCGAACC 1686317 Query 6461 AAATTAGTTATGCTAACCATTTGGATTATGAGAAGTGGAACAATTATCAA--AGGATTGA 6518 || | | ||| || || || ||||||| |||||||| || | || |||| || Sbjct 1686316 AAGTAAATTACGCGAATCACCTGGATTACTCAAAGTGGAATAACCACCAGCGAGGA--GA 1686259 Query 6519 GTCCAACGGACCGGTCTTCAAAGTCATGGGACAGTTTCTGGGGTATCCAAATCTTATATA 6578 | | |||| ||||| || | |||||||| || || |||||| || || || | Sbjct 1686258 GGCGAACGACCCGGTGTTTAGGGTCATGGGTCAATTCCTGGGGCTCCCGAACCTGTTCAC 1686199 Query 6579 TCGAACACATGAGTTCTTCCAGAAAAGCATCATTTACTACAATGATAGGCCGGATTTGAT 6638 ||| || |||||||||||| ||||| | | | || ||||| || ||||||| |||| Sbjct 1686198 TCGGACCCATGAGTTCTTCAAGAAATCCCTTGTCTATTACAAAGACCGGCCGGACCTGAT 1686139 Query 6639 GGTAGTAGAGAACGGGATGATAGTGAATCGCACTGAAGAGAGAGTAGTGTGGAACGGACA 6698 | ||| || || | | | | ||| ||| ||| | | || ||| | || || Sbjct 1686138 GAGAGTGGAATCTGGAAAGGTCATCAATGCCACCGAAAACATCGTTTGCTGGGAGGGCCA 1686079 Query 6699 AGCTGGGGGATTGGAAGGATTAAGGCAGAAAGGATGGAGTGT 6740 ||| || ||| ||||||| || | ||||| ||||||||||| Sbjct 1686078 AGCCGGCGGACTGGAAGGGCTACGACAGAAGGGATGGAGTGT 1686037 >seq1107 Length=3620151 Score = 91.5 bits (100), Expect = 1e-14 Identities = 300/462 (65%), Gaps = 6/462 (1%) Strand=Plus/Minus Query 6282 GGGAAGATTCTTCTCCCTGCTTTCTTGGGTACTTAGAGAGTATTTTGTCGTAACGGAATA 6341 ||| ||||| || || || | | |||| |||||||||| |||||| || || ||| | Sbjct 2215003 GGGGAGATTTTTTGCCATGATGGCGTGGGAGCTTAGAGAGTTTTTTGTGGTCACAGAACA 2214944 Query 6342 TCTTATAAAGATCCATTTCCTCCCTCTTTTTAAGGGACTGACTATGGCTGATGACTTGAC 6401 | | || || | ||| | | || | || | || || || ||||| || ||| | Sbjct 2214943 TTTGATCAAAACCCACTATGTTCCATTGTTCCACGGGCTCACCATGGCAGACGACCACAA 2214884 Query 6402 TACCCTCACCAAGAAGATGCTGGACACCTCCTCGGGTCAAGGGTTAAGTGGATACGA-CA 6460 ||| | | |||||||||| | || || | | | || | || ||| | Sbjct 2214883 TACAGTGATAGAGAAGATGCTCG-CAGCTTCAGATGCCCAGAACCCGGAAGACCCGAACC 2214825 Query 6461 AAATTAGTTATGCTAACCATTTGGATTATGAGAAGTGGAACAATTATCAA--AGGATTGA 6518 || | | ||| || || || | ||||| |||||||| || | || |||| || Sbjct 2214824 AAGTAAATTACGCGAATCACCTTGATTACTCAAAGTGGAATAACCACCAGCGAGGA--GA 2214767 Query 6519 GTCCAACGGACCGGTCTTCAAAGTCATGGGACAGTTTCTGGGGTATCCAAATCTTATATA 6578 | | |||| ||||| || | |||||||| || || |||||| || || || | Sbjct 2214766 GGCGAACGACCCGGTGTTTAGGGTCATGGGTCAATTCCTGGGGCTCCCGAACCTGTTCAC 2214707 Query 6579 TCGAACACATGAGTTCTTCCAGAAAAGCATCATTTACTACAATGATAGGCCGGATTTGAT 6638 ||| || |||||||||||| ||||| | | | || ||||| || ||||||| |||| Sbjct 2214706 TCGGACCCATGAGTTCTTCAAGAAATCCCTTGTCTATTACAAAGACCGGCCGGACCTGAT 2214647 Query 6639 GGTAGTAGAGAACGGGATGATAGTGAATCGCACTGAAGAGAGAGTAGTGTGGAACGGACA 6698 | ||| || || | | | | ||| ||| ||| | | || ||| | || || Sbjct 2214646 GAGAGTGGAATCTGGAAAGGTCATCAATGCCACCGAAAACATCGTTTGCTGGGAGGGCCA 2214587 Query 6699 AGCTGGGGGATTGGAAGGATTAAGGCAGAAAGGATGGAGTGT 6740 ||| || ||| ||||||| || | ||||| ||||||||||| Sbjct 2214586 AGCCGGCGGACTGGAAGGGCTACGACAGAAGGGATGGAGTGT 2214545 >seq1594 Length=5600000 Score = 87.8 bits (96), Expect = 1e-13 Identities = 327/504 (65%), Gaps = 9/504 (2%) Strand=Plus/Plus Query 6248 GCCTTAAGG-CGAAAGAGAGGGAACTAAAAGCACAGGGAAGATTCTTCTCCCTGCTTTCT 6306 ||||| ||| | ||||| |||||| | || | ||| ||||||||| | || | | Sbjct 3582697 GCCTTGAGGGCTAAAGAAAGGGAAATCAAGGAGATGGGCAGATTCTTCGCAATGATGGCA 3582756 Query 6307 TGGGTACTTAGAGAGTATTTTGTCGTAACGGAATATCTTATAAAGATCCATTTCCTCCCT 6366 |||| | | | |||| || || || || || | || || |||| ||| | | || Sbjct 3582757 TGGGAATTCCGGGAGTTCTTCGTTGTCACCGAGCACCTAATCAAGACCCACTATGTGCCC 3582816 Query 6367 CTTTTTAAGGGACTGACTATGGCTGATGACTTGACTACCCTCACCAAGAAGATGCTGGAC 6426 | ||| | || || || ||||| || ||| | ||| | | | |||||||| | | Sbjct 3582817 TTGTTTCATGGCCTAACCATGGCCGACGACCATAACACCGTGATCGAGAAGATGTTAGCT 3582876 Query 6427 ACCTCCTCGGGTCAAGGGTTAAGTGGATACGA-CAAAATTAGTTATGCTAACCATTTGGA 6485 ||||| | ||| | || |||| | | | | | | ||||||||||| | || Sbjct 3582877 GCCTCCGATGCACAAAA-TCCAGAGGATCCCAACCAGGTCAACTATGCTAACCACCTAGA 3582935 Query 6486 TTATGAGAAGTGGAACAATTATCAA--AGGATTGAGTCCAACGGACCGGTCTTCAAAGTC 6543 || || |||||||| ||||| |||| || |||| | || || ||||| || Sbjct 3582936 CTACTCCAAATGGAACAACCATCAACGAGGA--GAAGCCAATGACCCTGTGTTCAAGGTG 3582993 Query 6544 ATGGGACAGTTTCTGGGGTATCCAAATCTTATATA-TCGAACACATGAGTTCTTCCAGAA 6602 ||||| || ||| | |||| ||| || || | || |||||| || |||||||| | ||| Sbjct 3582994 ATGGGCCAATTT-TTGGGTCTCCCAAATTTGTTTACTCGAACTCACGAGTTCTTTCGGAA 3583052 Query 6603 AAGCATCATTTACTACAATGATAGGCCGGATTTGATGGTAGTAGAGAACGGGATGATAGT 6662 | | || |||||||| ||||| || || | ||| || || ||||| | | Sbjct 3583053 GTCCCTGATCTACTACAAAGATAGACCAGACCTCATGAGGGTTGAATCCGGGAAAGTCAT 3583112 Query 6663 GAATCGCACTGAAGAGAGAGTAGTGTGGAACGGACAAGCTGGGGGATTGGAAGGATTAAG 6722 ||| || ||| | | || ||||| || ||||| || || | || || | | Sbjct 3583113 AAATGCAACAGAACATATCGTTTGTTGGAAGGGCCAAGCAGGCGGGCTAGAGGGCCTGCG 3583172 Query 6723 GCAGAAAGGATGGAGTGTTTTGAA 6746 || ||||||||||| ||| |||| Sbjct 3583173 CCAAAAAGGATGGAGCGTTGTGAA 3583196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35611824431860