Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09]
2,435 sequences; 2,247,306,217 total letters
Query= NC_031236.1
Length=11165
Score E
Sequences producing significant alignments: (Bits) Value
seq1774 95.1 9e-16
seq1107 91.5 1e-14
seq1594 87.8 1e-13
>seq1774
Length=2904822
Score = 95.1 bits (104), Expect = 9e-16
Identities = 301/462 (65%), Gaps = 6/462 (1%)
Strand=Plus/Minus
Query 6282 GGGAAGATTCTTCTCCCTGCTTTCTTGGGTACTTAGAGAGTATTTTGTCGTAACGGAATA 6341
||| ||||| || || || | | |||| |||||||||| |||||| || || ||| |
Sbjct 1686495 GGGGAGATTTTTTGCCATGATGGCGTGGGAGCTTAGAGAGTTTTTTGTGGTCACAGAACA 1686436
Query 6342 TCTTATAAAGATCCATTTCCTCCCTCTTTTTAAGGGACTGACTATGGCTGATGACTTGAC 6401
| | || || | ||| | | || | || | || || || ||||| || ||| |
Sbjct 1686435 TTTGATCAAAACCCACTATGTTCCATTGTTCCACGGGCTCACCATGGCAGACGACCACAA 1686376
Query 6402 TACCCTCACCAAGAAGATGCTGGACACCTCCTCGGGTCAAGGGTTAAGTGGATACGA-CA 6460
||| | | |||||||||| | || || | | | || | || ||| |
Sbjct 1686375 TACAGTGATAGAGAAGATGCTCG-CAGCTTCAGATGCCCAGAACCCGGAAGACCCGAACC 1686317
Query 6461 AAATTAGTTATGCTAACCATTTGGATTATGAGAAGTGGAACAATTATCAA--AGGATTGA 6518
|| | | ||| || || || ||||||| |||||||| || | || |||| ||
Sbjct 1686316 AAGTAAATTACGCGAATCACCTGGATTACTCAAAGTGGAATAACCACCAGCGAGGA--GA 1686259
Query 6519 GTCCAACGGACCGGTCTTCAAAGTCATGGGACAGTTTCTGGGGTATCCAAATCTTATATA 6578
| | |||| ||||| || | |||||||| || || |||||| || || || |
Sbjct 1686258 GGCGAACGACCCGGTGTTTAGGGTCATGGGTCAATTCCTGGGGCTCCCGAACCTGTTCAC 1686199
Query 6579 TCGAACACATGAGTTCTTCCAGAAAAGCATCATTTACTACAATGATAGGCCGGATTTGAT 6638
||| || |||||||||||| ||||| | | | || ||||| || ||||||| ||||
Sbjct 1686198 TCGGACCCATGAGTTCTTCAAGAAATCCCTTGTCTATTACAAAGACCGGCCGGACCTGAT 1686139
Query 6639 GGTAGTAGAGAACGGGATGATAGTGAATCGCACTGAAGAGAGAGTAGTGTGGAACGGACA 6698
| ||| || || | | | | ||| ||| ||| | | || ||| | || ||
Sbjct 1686138 GAGAGTGGAATCTGGAAAGGTCATCAATGCCACCGAAAACATCGTTTGCTGGGAGGGCCA 1686079
Query 6699 AGCTGGGGGATTGGAAGGATTAAGGCAGAAAGGATGGAGTGT 6740
||| || ||| ||||||| || | ||||| |||||||||||
Sbjct 1686078 AGCCGGCGGACTGGAAGGGCTACGACAGAAGGGATGGAGTGT 1686037
>seq1107
Length=3620151
Score = 91.5 bits (100), Expect = 1e-14
Identities = 300/462 (65%), Gaps = 6/462 (1%)
Strand=Plus/Minus
Query 6282 GGGAAGATTCTTCTCCCTGCTTTCTTGGGTACTTAGAGAGTATTTTGTCGTAACGGAATA 6341
||| ||||| || || || | | |||| |||||||||| |||||| || || ||| |
Sbjct 2215003 GGGGAGATTTTTTGCCATGATGGCGTGGGAGCTTAGAGAGTTTTTTGTGGTCACAGAACA 2214944
Query 6342 TCTTATAAAGATCCATTTCCTCCCTCTTTTTAAGGGACTGACTATGGCTGATGACTTGAC 6401
| | || || | ||| | | || | || | || || || ||||| || ||| |
Sbjct 2214943 TTTGATCAAAACCCACTATGTTCCATTGTTCCACGGGCTCACCATGGCAGACGACCACAA 2214884
Query 6402 TACCCTCACCAAGAAGATGCTGGACACCTCCTCGGGTCAAGGGTTAAGTGGATACGA-CA 6460
||| | | |||||||||| | || || | | | || | || ||| |
Sbjct 2214883 TACAGTGATAGAGAAGATGCTCG-CAGCTTCAGATGCCCAGAACCCGGAAGACCCGAACC 2214825
Query 6461 AAATTAGTTATGCTAACCATTTGGATTATGAGAAGTGGAACAATTATCAA--AGGATTGA 6518
|| | | ||| || || || | ||||| |||||||| || | || |||| ||
Sbjct 2214824 AAGTAAATTACGCGAATCACCTTGATTACTCAAAGTGGAATAACCACCAGCGAGGA--GA 2214767
Query 6519 GTCCAACGGACCGGTCTTCAAAGTCATGGGACAGTTTCTGGGGTATCCAAATCTTATATA 6578
| | |||| ||||| || | |||||||| || || |||||| || || || |
Sbjct 2214766 GGCGAACGACCCGGTGTTTAGGGTCATGGGTCAATTCCTGGGGCTCCCGAACCTGTTCAC 2214707
Query 6579 TCGAACACATGAGTTCTTCCAGAAAAGCATCATTTACTACAATGATAGGCCGGATTTGAT 6638
||| || |||||||||||| ||||| | | | || ||||| || ||||||| ||||
Sbjct 2214706 TCGGACCCATGAGTTCTTCAAGAAATCCCTTGTCTATTACAAAGACCGGCCGGACCTGAT 2214647
Query 6639 GGTAGTAGAGAACGGGATGATAGTGAATCGCACTGAAGAGAGAGTAGTGTGGAACGGACA 6698
| ||| || || | | | | ||| ||| ||| | | || ||| | || ||
Sbjct 2214646 GAGAGTGGAATCTGGAAAGGTCATCAATGCCACCGAAAACATCGTTTGCTGGGAGGGCCA 2214587
Query 6699 AGCTGGGGGATTGGAAGGATTAAGGCAGAAAGGATGGAGTGT 6740
||| || ||| ||||||| || | ||||| |||||||||||
Sbjct 2214586 AGCCGGCGGACTGGAAGGGCTACGACAGAAGGGATGGAGTGT 2214545
>seq1594
Length=5600000
Score = 87.8 bits (96), Expect = 1e-13
Identities = 327/504 (65%), Gaps = 9/504 (2%)
Strand=Plus/Plus
Query 6248 GCCTTAAGG-CGAAAGAGAGGGAACTAAAAGCACAGGGAAGATTCTTCTCCCTGCTTTCT 6306
||||| ||| | ||||| |||||| | || | ||| ||||||||| | || | |
Sbjct 3582697 GCCTTGAGGGCTAAAGAAAGGGAAATCAAGGAGATGGGCAGATTCTTCGCAATGATGGCA 3582756
Query 6307 TGGGTACTTAGAGAGTATTTTGTCGTAACGGAATATCTTATAAAGATCCATTTCCTCCCT 6366
|||| | | | |||| || || || || || | || || |||| ||| | | ||
Sbjct 3582757 TGGGAATTCCGGGAGTTCTTCGTTGTCACCGAGCACCTAATCAAGACCCACTATGTGCCC 3582816
Query 6367 CTTTTTAAGGGACTGACTATGGCTGATGACTTGACTACCCTCACCAAGAAGATGCTGGAC 6426
| ||| | || || || ||||| || ||| | ||| | | | |||||||| | |
Sbjct 3582817 TTGTTTCATGGCCTAACCATGGCCGACGACCATAACACCGTGATCGAGAAGATGTTAGCT 3582876
Query 6427 ACCTCCTCGGGTCAAGGGTTAAGTGGATACGA-CAAAATTAGTTATGCTAACCATTTGGA 6485
||||| | ||| | || |||| | | | | | | ||||||||||| | ||
Sbjct 3582877 GCCTCCGATGCACAAAA-TCCAGAGGATCCCAACCAGGTCAACTATGCTAACCACCTAGA 3582935
Query 6486 TTATGAGAAGTGGAACAATTATCAA--AGGATTGAGTCCAACGGACCGGTCTTCAAAGTC 6543
|| || |||||||| ||||| |||| || |||| | || || ||||| ||
Sbjct 3582936 CTACTCCAAATGGAACAACCATCAACGAGGA--GAAGCCAATGACCCTGTGTTCAAGGTG 3582993
Query 6544 ATGGGACAGTTTCTGGGGTATCCAAATCTTATATA-TCGAACACATGAGTTCTTCCAGAA 6602
||||| || ||| | |||| ||| || || | || |||||| || |||||||| | |||
Sbjct 3582994 ATGGGCCAATTT-TTGGGTCTCCCAAATTTGTTTACTCGAACTCACGAGTTCTTTCGGAA 3583052
Query 6603 AAGCATCATTTACTACAATGATAGGCCGGATTTGATGGTAGTAGAGAACGGGATGATAGT 6662
| | || |||||||| ||||| || || | ||| || || ||||| | |
Sbjct 3583053 GTCCCTGATCTACTACAAAGATAGACCAGACCTCATGAGGGTTGAATCCGGGAAAGTCAT 3583112
Query 6663 GAATCGCACTGAAGAGAGAGTAGTGTGGAACGGACAAGCTGGGGGATTGGAAGGATTAAG 6722
||| || ||| | | || ||||| || ||||| || || | || || | |
Sbjct 3583113 AAATGCAACAGAACATATCGTTTGTTGGAAGGGCCAAGCAGGCGGGCTAGAGGGCCTGCG 3583172
Query 6723 GCAGAAAGGATGGAGTGTTTTGAA 6746
|| ||||||||||| ||| ||||
Sbjct 3583173 CCAAAAAGGATGGAGCGTTGTGAA 3583196
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 35611824431860
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |