Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_031268.1 Length=8683 Score E Sequences producing significant alignments: (Bits) Value seq1774 125 4e-25 seq1594 125 4e-25 seq1107 125 4e-25 seq1480 105 4e-19 >seq1774 Length=2904822 Score = 125 bits (138), Expect = 4e-25 Identities = 324/493 (66%), Gaps = 8/493 (2%) Strand=Plus/Minus Query 3683 CAAGGAGCGAGAGTTAAAAGACGTGGGAAGATTTTTCTCTCTGATGACCTGGGATCTGAG 3742 |||||| |||||| | || || |||| |||||||| | ||||| | ||||| || || Sbjct 1686519 CAAGGAACGAGAGATCAAGGAGATGGGGAGATTTTTTGCCATGATGGCGTGGGAGCTTAG 1686460 Query 3743 AGAGTATTTTGTATCCACTGAGTACCTCATTAAGATGTATTATGTTCCCTTGTTTGAAGG 3802 ||||| |||||| ||| || | | || || | | |||||||| ||||| | || Sbjct 1686459 AGAGTTTTTTGTGGTCACAGAACATTTGATCAAAACCCACTATGTTCCATTGTTCCACGG 1686400 Query 3803 ACTCACCATGGCAGATGATCTAAAATCTGTAACACGAAAGATACTGGAGTGTACCACTGG 3862 |||||||||||||| || | || | || | | ||||| || | | | || Sbjct 1686399 GCTCACCATGGCAGACGACCACAATACAGTGATAGAGAAGATGCTCGCAGCTTCAGATGC 1686340 Query 3863 TCA----CGGTCAGATCGGTTACAAGGTAGTCAGCTTTGCTAATCACTTAGACTATGAGA 3918 || | | ||| | | |||| | | | || |||||| | || || | Sbjct 1686339 CCAGAACCCGGAAGACCCGAACCAAGTAAATTAC----GCGAATCACCTGGATTACTCAA 1686284 Query 3919 AATGGAACAATCATCAGAGGAAAAAGTCAACCTTCCCCGTCTTCAAGGTTATGGGTCAGT 3978 | ||||| || || ||| | | || | | | ||| || || | ||| |||||||| | Sbjct 1686283 AGTGGAATAACCACCAGCGAGGAGAGGCGAACGACCCGGTGTTTAGGGTCATGGGTCAAT 1686224 Query 3979 TCCTTGGGATGCCAAACCTATTCGCTCAAACTCATGATTTCTTCGAACAGAGTTTTGTTT 4038 |||| ||| | || ||||| ||| ||| || ||||| |||||| | | |||| | Sbjct 1686223 TCCTGGGGCTCCCGAACCTGTTCACTCGGACCCATGAGTTCTTCAAGAAATCCCTTGTCT 1686164 Query 4039 ATTATGGTGAACGTCCTGATCTTATGACTGTTCAAGGAGGAAAGATCGTGAACAATACAG 4098 |||| || || || || || |||| || || |||||| || | || || | Sbjct 1686163 ATTACAAAGACCGGCCGGACCTGATGAGAGTGGAATCTGGAAAGGTCATCAATGCCACCG 1686104 Query 4099 AACATATTGTATGTTGGAACGGTCAACTGGGCGGACTTGAAGGACTACGACAAAAGGGAT 4158 || | || || || ||| | || ||| |||||||| ||||| |||||||| ||||||| Sbjct 1686103 AAAACATCGTTTGCTGGGAGGGCCAAGCCGGCGGACTGGAAGGGCTACGACAGAAGGGAT 1686044 Query 4159 GGAGCGTCCTCAA 4171 |||| || |||| Sbjct 1686043 GGAGTGTGGTCAA 1686031 >seq1594 Length=5600000 Score = 125 bits (138), Expect = 4e-25 Identities = 370/556 (67%), Gaps = 12/556 (2%) Strand=Plus/Plus Query 3706 TGGGAAGATTTTTCTCTCTGATGACCTGGGATCTGAGAGAGTATTTTGTATCCACTGAGT 3765 |||| ||||| ||| | ||||| | ||||| | | |||| || || ||| ||| Sbjct 3582731 TGGGCAGATTCTTCGCAATGATGGCATGGGAATTCCGGGAGTTCTTCGTTGTCACCGAGC 3582790 Query 3766 ACCTCATTAAGATGTATTATGTTCCCTTGTTTGAAGGACTCACCATGGCAGATGATCTAA 3825 |||| || |||| | ||||| ||||||||| | || || |||||||| || || | | Sbjct 3582791 ACCTAATCAAGACCCACTATGTGCCCTTGTTTCATGGCCTAACCATGGCCGACGACCATA 3582850 Query 3826 AATCTGTAACACGA-AAGATACTGGAGTGTACCACTGGTCACGGTC-AGATCGGTTACAA 3883 | | || | ||| ||||| | | || || || || ||| | | ||| Sbjct 3582851 ACACCGTGAT-CGAGAAGATGTTAGCTGCCTCCGATGCACAAAATCCAGAG-GATCCCAA 3582908 Query 3884 GGTAGTCAGCTTTGCTAATCACTTAGACTATGAGAAATGGAACAATCATCA--GAGGAAA 3941 |||| || |||||| ||| ||||||| ||||||||||| ||||| ||||| | Sbjct 3582909 CCAGGTCAACTATGCTAACCACCTAGACTACTCCAAATGGAACAACCATCAACGAGGAGA 3582968 Query 3942 AAGTCAACCTTCCCCGTCTTCAAGGTTATGGGTCAGTTCCTTGGGATGCCAAACCTATTC 4001 | | ||| ||| || |||||||| ||||| || || | || | ||||| | || Sbjct 3582969 A-GCCAATGA-CCCTGTGTTCAAGGTGATGGGCCAATTTTTGGGTCTCCCAAATTTGTTT 3583026 Query 4002 GCTCAAACTCATGATTTCTT-CGAACAGAGTTTTGTTTATTATGGTGAACGTCCTGATCT 4060 ||| |||||| || ||||| || | || | | || || || | || || || Sbjct 3583027 ACTCGAACTCACGAGTTCTTTCGGA-AGTCCCTGATCTACTACAAAGATAGACCAGACCT 3583085 Query 4061 TATGACTGTTCAAGGAGGAAAGATCGTGAACAATACAGAACATATTGTATGTTGGAACGG 4120 |||| ||| || || || || | || ||||||||||| || |||||||| || Sbjct 3583086 CATGAGGGTTGAATCCGGGAAAGTCATAAATGCAACAGAACATATCGTTTGTTGGAAGGG 3583145 Query 4121 TCAACTGGGCGGACTTGAAGGACTACGACAAAAGGGATGGAGCGTCCTCAATCTTCTCGT 4180 ||| ||||| || || || || || ||||| ||||||||||| | || || | Sbjct 3583146 CCAAGCAGGCGGGCTAGAGGGCCTGCGCCAAAAAGGATGGAGCGTTGTGAACTACCTGGG 3583205 Query 4181 CATCCTACGAGAGTCGAAGATCCGCAACACCCAAGTCAGAGTG-CTTGCTCAAGGTGACA 4239 |||| || || | ||||||| || ||||| ||| |||| || || ||||| |||| Sbjct 3583206 CATCGAGCGTCAGGCCAAGATCCAGAATACCCATATCA-AGTGTCTGGCCCAAGGAGACA 3583264 Query 4240 ACCAAGTGATTTGCAC 4255 |||| | || ||||| Sbjct 3583265 ACCAGATAATATGCAC 3583280 >seq1107 Length=3620151 Score = 125 bits (138), Expect = 4e-25 Identities = 324/493 (66%), Gaps = 8/493 (2%) Strand=Plus/Minus Query 3683 CAAGGAGCGAGAGTTAAAAGACGTGGGAAGATTTTTCTCTCTGATGACCTGGGATCTGAG 3742 |||||| |||||| | || || |||| |||||||| | ||||| | ||||| || || Sbjct 2215027 CAAGGAACGAGAGATCAAGGAGATGGGGAGATTTTTTGCCATGATGGCGTGGGAGCTTAG 2214968 Query 3743 AGAGTATTTTGTATCCACTGAGTACCTCATTAAGATGTATTATGTTCCCTTGTTTGAAGG 3802 ||||| |||||| ||| || | | || || | | |||||||| ||||| | || Sbjct 2214967 AGAGTTTTTTGTGGTCACAGAACATTTGATCAAAACCCACTATGTTCCATTGTTCCACGG 2214908 Query 3803 ACTCACCATGGCAGATGATCTAAAATCTGTAACACGAAAGATACTGGAGTGTACCACTGG 3862 |||||||||||||| || | || | || | | ||||| || | | | || Sbjct 2214907 GCTCACCATGGCAGACGACCACAATACAGTGATAGAGAAGATGCTCGCAGCTTCAGATGC 2214848 Query 3863 TCA----CGGTCAGATCGGTTACAAGGTAGTCAGCTTTGCTAATCACTTAGACTATGAGA 3918 || | | ||| | | |||| | | | || |||||| | || || | Sbjct 2214847 CCAGAACCCGGAAGACCCGAACCAAGTAAATTAC----GCGAATCACCTTGATTACTCAA 2214792 Query 3919 AATGGAACAATCATCAGAGGAAAAAGTCAACCTTCCCCGTCTTCAAGGTTATGGGTCAGT 3978 | ||||| || || ||| | | || | | | ||| || || | ||| |||||||| | Sbjct 2214791 AGTGGAATAACCACCAGCGAGGAGAGGCGAACGACCCGGTGTTTAGGGTCATGGGTCAAT 2214732 Query 3979 TCCTTGGGATGCCAAACCTATTCGCTCAAACTCATGATTTCTTCGAACAGAGTTTTGTTT 4038 |||| ||| | || ||||| ||| ||| || ||||| |||||| | | |||| | Sbjct 2214731 TCCTGGGGCTCCCGAACCTGTTCACTCGGACCCATGAGTTCTTCAAGAAATCCCTTGTCT 2214672 Query 4039 ATTATGGTGAACGTCCTGATCTTATGACTGTTCAAGGAGGAAAGATCGTGAACAATACAG 4098 |||| || || || || || |||| || || |||||| || | || || | Sbjct 2214671 ATTACAAAGACCGGCCGGACCTGATGAGAGTGGAATCTGGAAAGGTCATCAATGCCACCG 2214612 Query 4099 AACATATTGTATGTTGGAACGGTCAACTGGGCGGACTTGAAGGACTACGACAAAAGGGAT 4158 || | || || || ||| | || ||| |||||||| ||||| |||||||| ||||||| Sbjct 2214611 AAAACATCGTTTGCTGGGAGGGCCAAGCCGGCGGACTGGAAGGGCTACGACAGAAGGGAT 2214552 Query 4159 GGAGCGTCCTCAA 4171 |||| || |||| Sbjct 2214551 GGAGTGTGGTCAA 2214539 >seq1480 Length=8353993 Score = 105 bits (116), Expect = 4e-19 Identities = 241/362 (67%), Gaps = 3/362 (1%) Strand=Plus/Minus Query 3897 GCTAATCACTTAGACTATGAGAAATGGAACAATCATCAGAGGAAAAAGTCAACCTTCCCC 3956 ||||||||| | || ||||| ||||||||||| ||| || | | || | || | |||| Sbjct 8252947 GCTAATCACATCGATTATGAAAAATGGAACAACTTTCAAAGAAGAGAGGCCACTTCCCCC 8252888 Query 3957 GTCTTCAAGGTTATGGGTCAGTTCCTTGGGATGCCAAACCTATTCGCTCAAACTCATGAT 4016 || |||| || || || || || |||| | || || |||||||| | || ||||| Sbjct 8252887 GTTTTCACAGTGATTGGGCAATTTTTTGGACTACCTAATCTATTCGCCCGCACGCATGAA 8252828 Query 4017 TTCTTCGAACAGAGTTTTGTTTATTATGGTGAACGTCCTGATCTTATGACTGTTCAAGGA 4076 ||||| ||| | || | |||||| | || ||||| ||||| || | || ||| Sbjct 8252827 TTCTTTGAAAAATCATTAATATATTATCGAGACCGTCCAGATCTAATAAAGGTCGAAGAT 8252768 Query 4077 GGAAAGATCGTGAA---CAATACAGAACATATTGTATGTTGGAACGGTCAACTGGGCGGA 4133 || | ||| ||| | | ||| || | |||||||| || || || ||| Sbjct 8252767 GGGGTGGTCGCGAATGTGGACCCGGAAAGGATGATGTGTTGGAATGGACAGGCCGGAGGA 8252708 Query 4134 CTTGAAGGACTACGACAAAAGGGATGGAGCGTCCTCAATCTTCTCGTCATCCTACGAGAG 4193 || ||||| | ||||||| || ||||| || |||||| | | || ||| | ||| Sbjct 8252707 CTCGAAGGGTTGAGACAAAAAGGGTGGAGTGTTCTCAATTTATTGGTAATCGAGAGGGAG 8252648 Query 4194 TCGAAGATCCGCAACACCCAAGTCAGAGTGCTTGCTCAAGGTGACAACCAAGTGATTTGC 4253 || || || ||||| | || | | ||||| |||||||| || || |||||| Sbjct 8252647 TCACGCATTCGTAACACTAAGGTGCTCACGTTAGCTCAGGGTGACAATCAGGTCATTTGC 8252588 Query 4254 AC 4255 || Sbjct 8252587 AC 8252586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27669642003980