Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_031305.1 Length=10833 Score E Sequences producing significant alignments: (Bits) Value seq1594 141 6e-30 seq1480 131 1e-26 >seq1594 Length=5600000 Score = 141 bits (156), Expect = 6e-30 Identities = 411/621 (66%), Gaps = 20/621 (3%) Strand=Plus/Plus Query 5963 GTGAATGATGACGGGATACCTAGAGATCAGCTGGTTATCGGACTGAAAGGGAAGGAACGG 6022 || |||||| ||||| | | || || || ||||||| ||| | || ||| || Sbjct 3582658 GTCAATGATCACGGGCTTGATCCGGAGCAACTAGTTATCGCCTTGAGGGCTAAAGAAAGG 3582717 Query 6023 GAGTTGAAGAAAAACGGGCGCTTCTTCTCATTGATGTCATGGATGTTGCGAGAATATTTC 6082 || | ||| | | || | |||||| || ||||| ||||| || || || | ||| Sbjct 3582718 GAAATCAAGGAGATGGGCAGATTCTTCGCAATGATGGCATGGGAATTCCGGGAGTTCTTC 3582777 Query 6083 GTGGTCACTGAGTACCTTATCAAGCTTCACTATGTTCCCCTTTTCTCA-GGCCTGACTAT 6141 || ||||| ||| |||| |||||| |||||||| ||| | || ||| ||||| || || Sbjct 3582778 GTTGTCACCGAGCACCTAATCAAGACCCACTATGTGCCCTTGTT-TCATGGCCTAACCAT 3582836 Query 6142 GGCGGATGATCTAACCACAGTCATCACCAAATTATTGGACCGGACCCAAGGACAGGGAGG 6201 ||| || || | | ||| || ||| || | || | || | | ||| | Sbjct 3582837 GGCCGACGACCATAACACCGTGATCGAGAAGATGTTAGCTGCCTCCGATGCACA---AAA 3582893 Query 6202 TACATCGTATGAAAATATCTGCATC---GCCAATCACATTGATTATGAGAAATGGAACAA 6258 | || | || || || | || || ||| | || || ||||||||||| Sbjct 3582894 TCCAGAGGATCCCAACCAGGTCAACTATGCTAACCACCTAGACTACTCCAAATGGAACAA 3582953 Query 6259 TCATCAACGTCAGGAG--GCCACTGCGCCAGTGTTCAGGGTGATGGGACAATTCCTTGGA 6316 |||||||| ||||| |||| || || ||||||| ||||||||| ||||| |||| Sbjct 3582954 CCATCAACG--AGGAGAAGCCAATGACCCTGTGTTCAAGGTGATGGGCCAATT-TTTGGG 3583010 Query 6317 TAT-CCAAACCTCATTGCGAGGACCCATGAGTTCTTTCAACAAAGCTTAATATACTACAA 6375 | | ||||| | || | | || || |||||||||| | | | || |||||||| Sbjct 3583011 TCTCCCAAATTTGTTTACTCGAACTCACGAGTTCTTTCGGAAGTCCCTGATCTACTACAA 3583070 Query 6376 TGGTAGGCCCGATCTCATGA---TTGTGTCCAAGGATTCTCTTAAGTCCCGTGGCCAACA 6432 | ||| || || ||||||| ||| ||| ||| || ||| | | | |||| Sbjct 3583071 AGATAGACCAGACCTCATGAGGGTTGAATCC-GGGAAAGTCATAAATGCAACAG--AACA 3583127 Query 6433 TTTGGTTTGTTGGGAGGGCCAGGCAGGCGGACTGGAAGGTTTGCGACAAAAAGGATGGAG 6492 | | ||||||||| ||||||| |||||||| || || || |||| |||||||||||||| Sbjct 3583128 TATCGTTTGTTGGAAGGGCCAAGCAGGCGGGCTAGAGGGCCTGCGCCAAAAAGGATGGAG 3583187 Query 6493 TGTCCTTAGCCTATTGGTTATTCAGAGGGAGTCCAAAATAAGAAATACCAAGGTCAAGAC 6552 || | | | ||| || || | || |||| || |||||| | ||||| Sbjct 3583188 CGTTGTGAACTACCTGGGCATCGAGCGTCAGGCCAAGATCCAGAATACCCATATCAAGTG 3583247 Query 6553 GCTGGCGCAAGGTGACAACCA 6573 ||||| ||||| |||||||| Sbjct 3583248 TCTGGCCCAAGGAGACAACCA 3583268 >seq1480 Length=8353993 Score = 131 bits (144), Expect = 1e-26 Identities = 253/371 (68%), Gaps = 13/371 (4%) Strand=Plus/Minus Query 6224 ATCGCCAATCACATTGATTATGAGAAATGGAACAATCATCAACGTCAGGAGGCCACTGCG 6283 ||||| |||||||| |||||||| ||||||||||| |||| | ||||||||| | Sbjct 8252950 ATCGCTAATCACATCGATTATGAAAAATGGAACAACTTTCAAAGAAGAGAGGCCACTTCC 8252891 Query 6284 CCAGTGTTCAGGGTGATGGGACAATTCCTTGGATATCCAAACCTCATTGCGAGGACCCAT 6343 || || |||| ||||| || ||||| ||||| || || || | || | || ||| Sbjct 8252890 CCCGTTTTCACAGTGATTGGGCAATTTTTTGGACTACCTAATCTATTCGCCCGCACGCAT 8252831 Query 6344 GAGTTCTTTCAACAAAGCTTAATATACTACAATGGTAGGCCCGATCTCATGATTGTGTCC 6403 || |||||| || || |||||||| || | | || ||||| || | ||| Sbjct 8252830 GAATTCTTTGAAAAATCATTAATATATTATCGAGACCGTCCAGATCTAATAA--AGGTCG 8252773 Query 6404 AA----GGATTCTCTTAAGTCCCGTGGCC----AACATTTGGTTTGTTGGGAGGGCCAGG 6455 || || | || | | |||| | || || | |||||| | || |||| Sbjct 8252772 AAGATGGGGTGGTCGCGAAT---GTGGACCCGGAAAGGATGATGTGTTGGAATGGACAGG 8252716 Query 6456 CAGGCGGACTGGAAGGTTTGCGACAAAAAGGATGGAGTGTCCTTAGCCTATTGGTTATTC 6515 | || ||||| ||||| ||| |||||||||| |||||||| || | ||||||| || Sbjct 8252715 CCGGAGGACTCGAAGGGTTGAGACAAAAAGGGTGGAGTGTTCTCAATTTATTGGTAATCG 8252656 Query 6516 AGAGGGAGTCCAAAATAAGAAATACCAAGGTCAAGACGCTGGCGCAAGGTGACAACCAAG 6575 |||||||||| || | || || ||||| ||| | || || |||||||| || | Sbjct 8252655 AGAGGGAGTCACGCATTCGTAACACTAAGGTGCTCACGTTAGCTCAGGGTGACAATCAGG 8252596 Query 6576 TCATTTGTACT 6586 ||||||| ||| Sbjct 8252595 TCATTTGCACT 8252585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34549453534980