Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_031690.1 Length=11308 Score E Sequences producing significant alignments: (Bits) Value seq1594 131 1e-26 seq1107 100 2e-17 seq1774 96.9 2e-16 >seq1594 Length=5600000 Score = 131 bits (144), Expect = 1e-26 Identities = 359/537 (67%), Gaps = 26/537 (5%) Strand=Plus/Minus Query 4280 GTGCAGACCACCTGATTGTCCCCTTGAGCCAGAACTTTAACAAATGTATTGTTGCTTTTG 4339 ||||| | | ||| ||||| ||||| |||||| || | | ||||| | | | ||| Sbjct 3583280 GTGCATATTATCTGGTTGTCTCCTTGGGCCAGACACTTGATATGGGTATTCTGGATCTTG 3583221 Query 4340 G----ATGCTCTGTTGATGGCGAGAAGGTTTACAATACTCCATCCCTTTTGGCGCAATCC 4395 | | |||| |||| | || ||| |||| |||||||| |||||||||| || Sbjct 3583220 GCCTGACGCTC----GATGCCCAGGTAGTTCACAACGCTCCATCCTTTTTGGCGCAGGCC 3583165 Query 4396 CTCTAATCCCCCCAATTGACCTTGCCAGCAATACAGTTGTCCCGGTTTATTGACGATTCT 4455 ||||| || || ||| || | ||| ||| | ||| | | | ||| | || | | Sbjct 3583164 CTCTAGCCCGCCTGCTTGGCCCTTCCAACAAACGATATGTTCTGTTGCATTTATGACT-T 3583106 Query 4456 TCCATCATGACAGCGCAGTTGA--TCAGGTCTATCCAGGTAATATATCAGTGATTTTTCA 4513 ||| || || | | ||| || |||||||| ||| || ||||| || || | Sbjct 3583105 TCCCGGATT-CAACCCTCATGAGGTCTGGTCTATCTTTGTAGTAGATCAGGGACTTCCGA 3583047 Query 4514 AAGAATTCATGAGTTCGAG-ATATTAGTTTTGGATACCCAAGAAACTTTCCCATCACATC 4572 ||||| || |||||||||| | | | ||| ||| |||||| ||| | |||||||| | Sbjct 3583046 AAGAACTCGTGAGTTCGAGTAAACAAATTTGGGAGACCCAA-AAATTGGCCCATCACCTT 3582988 Query 4573 AAATACAGGATTATTGGCTTTGGCTCGTTGATGGTTATTCCATTTGCTATAATCAAAGTG 4632 || ||||| | |||||||| ||||||||||||| ||||||||| || || | ||| Sbjct 3582987 GAACACAGGGTCATTGGCTTCTCCTCGTTGATGGTTGTTCCATTTGGAGTAGTCTAGGTG 3582928 Query 4633 ATTGGCGATACAGATGTTCTCGT----ACCCT-TCACTTCCTTGACCTGAAGTTGTATCC 4687 || || | || || || || | ||| | || ||| | | | | | Sbjct 3582927 GTTAGC---ATAGTTGACCTGGTTGGGATCCTCTGGATT--TTGTGCATCGGAGGCAGCT 3582873 Query 4688 ATCATTTTCTTTATGACGGTAGTCAT-ATCATCTGCCATAGTTAGTCCTTTAAACAATGG 4746 | ||| |||| || ||||| || || || || ||||| ||||| || | |||||| || Sbjct 3582872 AACATCTTCTCGATCACGGT-GTTATGGTCGTCGGCCATGGTTAGGCCATGAAACAAGGG 3582814 Query 4747 AACAAAGTGAGTCTTGATTAGGTGTTCTGTTATTACAAAATACTCTCGTAAAGCCCA 4803 ||| |||| |||||||||||||| || || | || || |||| || || |||| Sbjct 3582813 CACATAGTGGGTCTTGATTAGGTGCTCGGTGACAACGAAGAACTCCCGGAATTCCCA 3582757 >seq1107 Length=3620151 Score = 100 bits (110), Expect = 2e-17 Identities = 243/364 (67%), Gaps = 8/364 (2%) Strand=Plus/Plus Query 4492 GTAATATATCAGTGATTTTTCAAAGAATTCATGAGTTCGAGATATTAGTTTTGGATACCC 4551 |||||| | || ||||| | ||||| ||||| || |||| | || || || ||| Sbjct 2214667 GTAATAGACAAGGGATTTCTTGAAGAACTCATGGGTCCGAGTGAACAGGTTCGGGAGCCC 2214726 Query 4552 AAGAAACTTTCCCATCACATCAAATACAGGATTATTGGCTTTGGCTCGTTGATGGTTATT 4611 || || | ||||| || ||| || || | || || | |||| || |||||||| Sbjct 2214727 CAGGAATTGACCCATGACCCTAAACACCGGGTCGTTCGCCTCTCCTCGCTGGTGGTTATT 2214786 Query 4612 CCATTTGCTATAATCAAAGTGATTGGCG--ATACAGATGTTCTCGTACCCTTCACTTCCT 4669 ||| || ||||||| |||||| ||| || | || | ||| | | | | || Sbjct 2214787 CCACTTTGAGTAATCAAGGTGATTCGCGTAATTTACTTGGT-TCGGGTCTTCCGGGTTCT 2214845 Query 4670 TGAC--CTGAAGTTGTATCCATCATTTTCTTTATGACGGTAGTCATATCATCTGCCATAG 4727 | | |||||| || | | ||| |||| ||| || ||| | || |||||||| | Sbjct 2214846 GGGCATCTGAAGCTG---CGAGCATCTTCTCTATCACTGTATTGTGGTCGTCTGCCATGG 2214902 Query 4728 TTAGTCCTTTAAACAATGGAACAAAGTGAGTCTTGATTAGGTGTTCTGTTATTACAAAAT 4787 | || || | |||||||||||| |||| || ||||| | |||||||| | |||||| Sbjct 2214903 TGAGCCCGTGGAACAATGGAACATAGTGGGTTTTGATCAAATGTTCTGTGACCACAAAAA 2214962 Query 4788 ACTCTCGTAAAGCCCAGGTCAATAGAGCATAAAATCTTCCTCCAATCTTGATCTCTCGCT 4847 |||||| | |||| | || | ||| ||||||| || |||||||||||| | Sbjct 2214963 ACTCTCTAAGCTCCCACGCCATCATGGCAAAAAATCTCCCCATCTCCTTGATCTCTCGTT 2215022 Query 4848 CTTT 4851 | || Sbjct 2215023 CCTT 2215026 >seq1774 Length=2904822 Score = 96.9 bits (106), Expect = 2e-16 Identities = 242/364 (66%), Gaps = 8/364 (2%) Strand=Plus/Plus Query 4492 GTAATATATCAGTGATTTTTCAAAGAATTCATGAGTTCGAGATATTAGTTTTGGATACCC 4551 |||||| | || ||||| | ||||| ||||| || |||| | || || || ||| Sbjct 1686159 GTAATAGACAAGGGATTTCTTGAAGAACTCATGGGTCCGAGTGAACAGGTTCGGGAGCCC 1686218 Query 4552 AAGAAACTTTCCCATCACATCAAATACAGGATTATTGGCTTTGGCTCGTTGATGGTTATT 4611 || || | ||||| || ||| || || | || || | |||| || |||||||| Sbjct 1686219 CAGGAATTGACCCATGACCCTAAACACCGGGTCGTTCGCCTCTCCTCGCTGGTGGTTATT 1686278 Query 4612 CCATTTGCTATAATCAAAGTGATTGGCG--ATACAGATGTTCTCGTACCCTTCACTTCCT 4669 ||| || ||||| | |||||| ||| || | || | ||| | | | | || Sbjct 1686279 CCACTTTGAGTAATCCAGGTGATTCGCGTAATTTACTTGGT-TCGGGTCTTCCGGGTTCT 1686337 Query 4670 TGAC--CTGAAGTTGTATCCATCATTTTCTTTATGACGGTAGTCATATCATCTGCCATAG 4727 | | |||||| || | | ||| |||| ||| || ||| | || |||||||| | Sbjct 1686338 GGGCATCTGAAGCTG---CGAGCATCTTCTCTATCACTGTATTGTGGTCGTCTGCCATGG 1686394 Query 4728 TTAGTCCTTTAAACAATGGAACAAAGTGAGTCTTGATTAGGTGTTCTGTTATTACAAAAT 4787 | || || | |||||||||||| |||| || ||||| | |||||||| | |||||| Sbjct 1686395 TGAGCCCGTGGAACAATGGAACATAGTGGGTTTTGATCAAATGTTCTGTGACCACAAAAA 1686454 Query 4788 ACTCTCGTAAAGCCCAGGTCAATAGAGCATAAAATCTTCCTCCAATCTTGATCTCTCGCT 4847 |||||| | |||| | || | ||| ||||||| || |||||||||||| | Sbjct 1686455 ACTCTCTAAGCTCCCACGCCATCATGGCAAAAAATCTCCCCATCTCCTTGATCTCTCGTT 1686514 Query 4848 CTTT 4851 | || Sbjct 1686515 CCTT 1686518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36069411896480