Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_031691.1 Length=11238 Score E Sequences producing significant alignments: (Bits) Value seq1594 129 4e-26 seq1480 105 5e-19 seq1942 98.7 7e-17 >seq1594 Length=5600000 Score = 129 bits (142), Expect = 4e-26 Identities = 354/535 (66%), Gaps = 12/535 (2%) Strand=Plus/Minus Query 4337 CTCCATCCTTTTTGCCTAAGCCCCTCTAGTCCACCAGATTGCCCCGACCAGCAGACTCTA 4396 |||||||||||||| | || |||||||| || || | ||| ||| ||| || || || Sbjct 3583187 CTCCATCCTTTTTGGCGCAGGCCCTCTAGCCCGCCTGCTTGGCCCTTCCAACAAACGATA 3583128 Query 4397 TGTCCCCTTTTATTAACTATCTGTCCATCGAT--AATCTCCATCAGATCTGGTCTTTGAT 4454 ||| | || ||| | | || ||| ||| || | ||| || |||||||| | | Sbjct 3583127 TGTTCTGTTGCATTTATGA-CTTTCCCG-GATTCAACCCTCATGAGGTCTGGTCTATCTT 3583070 Query 4455 TGTAATAAATCAGACTCTGTTCAAAGAATTCATGGGTTCTAGATATTAAGTTGGGGTATC 4514 |||| || ||||| || |||||| || || |||| || | || || ||| | Sbjct 3583069 TGTAGTAGATCAGGGACTTCCGAAAGAACTCGTGAGTTCGAGTAAACAAATTTGGGAGAC 3583010 Query 4515 CCAAAAATTGTCCCATTACCTTGAATGTGGGATTATTGGCTGCTCCCCTCTGATGATTGT 4574 |||||||||| ||||| |||||||| || | ||||||| |||| | ||||| |||| Sbjct 3583009 CCAAAAATTGGCCCATCACCTTGAACACAGGGTCATTGGCTTCTCCTCGTTGATGGTTGT 3582950 Query 4575 TCCATTTTTCATAATCTACATGGTTGGCAAAGCTTACATGATCATAATTATCCGTACCTT 4634 ||||||| || |||| ||||| ||| || | || || | || || | | || Sbjct 3582949 TCCATTTGGAGTAGTCTAGGTGGTTAGCATAGTTGACCTGGTTGGGATCCTCTGGATTTT 3582890 Query 4635 GACCATATGTGTTGTCCATTAATTTTTTAGTCAAAACGGTG---GAGTTATCTGCCATGG 4691 | ||| | | | ||| | || | |||||| || || ||||||| Sbjct 3582889 GTGCAT---CGGAGGCAGCTAACATCTTCTCGATCACGGTGTTATGGTCGTCGGCCATGG 3582833 Query 4692 TTAGACCTTTAAATAATGGGACAAAATGCTTCTTGATCAGATATTCTGTTATTACGAAGT 4751 |||| || | ||| || || ||| | || ||||||| || | || || | |||||| Sbjct 3582832 TTAGGCCATGAAACAAGGGCACATAGTGGGTCTTGATTAGGTGCTCGGTGACAACGAAGA 3582773 Query 4752 ATTCTCTCAACTCCCAGGACATGAGCGCAAAAAATCTTCCTTTTATTTTCAGTTCACGCT 4811 | || | || ||||| | ||| | || || ||||| || | || | ||| | | Sbjct 3582772 ACTCCCGGAATTCCCATGCCATCATTGCGAAGAATCTGCCCATCTCCTTGATTTCCCTTT 3582713 Query 4812 CTTT-GCCTTTAAGTCCGATAAGAAGTTTCTCCTTATCCAGCCCCTGGTCATTGA 4865 |||| ||| | ||| |||||| |||| |||| ||| ||||| || ||||||| Sbjct 3582712 CTTTAGCCCTCAAG-GCGATAACTAGTTGCTCCGGATCAAGCCCGTGATCATTGA 3582659 Score = 98.7 bits (108), Expect = 7e-17 Identities = 262/396 (66%), Gaps = 6/396 (2%) Strand=Plus/Minus Query 4682 TCTGCCATGGTTAGACCTTTAAATAATGGGACAAAATGCTTCTTGATCAGATATTCTGTT 4741 || ||||||||||| || | ||| || || ||| | || ||||||| || | || || Sbjct 5062248 TCGGCCATGGTTAGGCCATGAAACAAGGGCACATAGTGGGTCTTGATTAGGTGCTCAGTG 5062189 Query 4742 ATTACGAAGTATTCTCTCAACTCCCAGGACATGAGCGCAAAAAATCTTCCTTTTATTTTC 4801 | |||||| |||||| | ||||| | ||| | || || |||| || || ||| Sbjct 5062188 ACGACGAAGAATTCTCGGAGTTCCCAAGCCATCATGGCGAAGAATCGGCCCATTTCTTTG 5062129 Query 4802 AGTTCACGCT-CTTTGCCTTTAAGTCCGATAAGAAGTTTCTCCTTATCCAGCCCCTGGTC 4860 | ||| | || ||| ||| | ||| |||||| |||| ||| ||| ||||| || || Sbjct 5062128 ATTTCCCTCTCCTTGGCCCTCAAG-GCGATAACTAGTTGCTCTGGATCAAGCCCGTGATC 5062070 Query 4861 ATTGATGCTTCTCAAGAATTCAGGCCAATTGGTCTGTTTGCGGTG--AAGATAAGACTCC 4918 ||||| || |||| ||||||| ||| ||||| ||| ||||| || || | ||| Sbjct 5062069 ATTGACTCTCCTCAGGAATTCACTCCAGTTGGTTGGTT--CGGTGGCAATGTAGGTCTCT 5062012 Query 4919 ATAACTTTCCTGCTGGGGATTGGCTTCTCTGACTTAGATAGGATGTGGTTCTTAACTTCA 4978 | ||| | |||||||||| | | | | | | |||||| || || || Sbjct 5062011 AGAACAGATTTAGAAGGGATTGGCTACCCAGGCCTGTTTTCGATGTGACTCAGGACCTCC 5061952 Query 4979 CCTAGATCCATGGAGTGACTCTTATCTGAATAAATGGTGGATGGGTCAATCATGTCTGGA 5038 | |||| ||||| || || | || ||| | | |||||| || |||||| Sbjct 5061951 GTTCTTCCCATTGAGTGGTGTTTGTCGGCGTAGATGATTGTTGGGTCGATGTAGTCTGGG 5061892 Query 5039 ATGTCAAAGCATTGAACAAGTGGGAGGATATGCCAG 5074 | |||||| ||||| | | ||||| |||||||| Sbjct 5061891 ACGTCAAAACATTGGATTAAAGGGAGCTTATGCCAG 5061856 >seq1480 Length=8353993 Score = 105 bits (116), Expect = 5e-19 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 4682 TCTGCCATGGTTAGACCTTTAAATAATGGGACAAAATGCTTCTTGATCAGATATTCTGTT 4741 ||||||||||| |||||||| ||||| || | | | ||||| || | || |||| Sbjct 8253885 TCTGCCATGGTAAGACCTTTGAATAAAGGAATTATTTTTTTCTTTATTAAGTACTCTGAG 8253944 Query 4742 ATTACGAAGTATTCTCTCAACTCCCAGGACATGAGCGCAAAAAATCTTCCTTTTATTTTC 4801 | ||||||||| || || ||| |||| |||||| ||||| ||||||||||| ||| Sbjct 8253945 AATACGAAGTACTCCCTTAACGACCAGCTCATGAGAGCAAAGAATCTTCCTTTCCATTTA 8254004 Query 4802 AGTTCACGCTCTTTGCCTTTAAGTCCGATAA 4832 | ||| |||||||| | || |||||||||| Sbjct 8254005 ATTTCCCGCTCTTTAGCCTTCAGTCCGATAA 8254035 >seq1942 Length=1338801 Score = 98.7 bits (108), Expect = 7e-17 Identities = 262/396 (66%), Gaps = 6/396 (2%) Strand=Plus/Minus Query 4682 TCTGCCATGGTTAGACCTTTAAATAATGGGACAAAATGCTTCTTGATCAGATATTCTGTT 4741 || ||||||||||| || | ||| || || ||| | || ||||||| || | || || Sbjct 906876 TCGGCCATGGTTAGGCCATGAAACAAGGGCACATAGTGGGTCTTGATTAGGTGCTCAGTG 906817 Query 4742 ATTACGAAGTATTCTCTCAACTCCCAGGACATGAGCGCAAAAAATCTTCCTTTTATTTTC 4801 | |||||| |||||| | ||||| | ||| | || || |||| || || ||| Sbjct 906816 ACGACGAAGAATTCTCGGAGTTCCCAAGCCATCATGGCGAAGAATCGGCCCATTTCTTTA 906757 Query 4802 AGTTCACGCT-CTTTGCCTTTAAGTCCGATAAGAAGTTTCTCCTTATCCAGCCCCTGGTC 4860 | ||| | || ||| ||| | ||| |||||| ||| ||| ||| ||||| || || Sbjct 906756 ATTTCCCTCTCCTTGGCCCTCAAG-GCGATAACTTGTTGCTCTGGATCAAGCCCGTGATC 906698 Query 4861 ATTGATGCTTCTCAAGAATTCAGGCCAATTGGTCTGTTTGCGGTG--AAGATAAGACTCC 4918 ||||| || |||| ||||||| ||| ||||| ||| ||||| || ||| | ||| Sbjct 906697 ATTGACTCTCCTCAGGAATTCACTCCAGTTGGTTGGTT--CGGTGGCAATATAGGTCTCT 906640 Query 4919 ATAACTTTCCTGCTGGGGATTGGCTTCTCTGACTTAGATAGGATGTGGTTCTTAACTTCA 4978 | ||| | |||||||||| | | | | | | |||||| || || || Sbjct 906639 AGAACAGATTTAGAAGGGATTGGCTGCCCAGGCCTGTTTTCGATGTGACTCAGGACCTCC 906580 Query 4979 CCTAGATCCATGGAGTGACTCTTATCTGAATAAATGGTGGATGGGTCAATCATGTCTGGA 5038 | |||| ||||| || || | || ||| | | |||||| || |||||| Sbjct 906579 GTTCTTCCCATTGAGTGGTGTTTGTCGGCGTAGATGATTGTTGGGTCGATGTAGTCTGGG 906520 Query 5039 ATGTCAAAGCATTGAACAAGTGGGAGGATATGCCAG 5074 | |||||| ||||| | | ||||| |||||||| Sbjct 906519 ACGTCAAAACATTGGATTAAAGGGAGCTTATGCCAG 906484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35845418032680