Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20albopictus_20[refseq_20GCF_5F001876365.2_202017-01-09] 2,435 sequences; 2,247,306,217 total letters Query= NC_034017.1 Length=10884 Score E Sequences producing significant alignments: (Bits) Value seq570 257 1e-64 seq296 242 3e-60 seq65 181 7e-42 >seq570 Length=1853759 Score = 257 bits (284), Expect = 1e-64 Identities = 388/542 (72%), Gaps = 11/542 (2%) Strand=Plus/Plus Query 8995 AACACCATGGGaaaaaaggagaaaaaa-CCAGCTGTCGCAGGGGAGCCGAAGGGGTCGAG 9053 || |||||||| |||||||| |||||| || | || || || || | ||||||||| | Sbjct 257984 AATACCATGGGCAAAAAGGAAAAAAAAACCGGGGGTTGCTGGAGAAGCTAAGGGGTCGCG 258043 Query 9054 GACCATTTGGTATATGTGGCTTGGCAGTCGCTATCTTGAATACGAAGCCCTAGGTTTCCT 9113 || |||||||| |||||||| ||| | | | || |||| ||||| || || ||||| Sbjct 258044 TACGATTTGGTACATGTGGCTAGGCTGCAGGTTCCTAGAATTTGAAGCTCTTGGCTTCCT 258103 Query 9114 CAATGAAGATCACTGGGTGTCACGGGAGAACTTCCCGGGAGGCGTTGGCGGACAGGGCGT 9173 ||| | || |||||||| || ||||||||||||||||| || || ||| || || Sbjct 258104 CAACGCTGACCACTGGGTTAGTCGCGAGAACTTCCCGGGAGGAGTAGGGGGAGTTGGGGT 258163 Query 9174 GAACTACTTCGGCAATTACCTGAAAGAGATCGCAGGGAAGGGAAAGTATTTCATCGCGGA 9233 |||||||| || ||||| ||||||| |||||| | |||||| | ||| |||| || Sbjct 258164 CAACTACTTTGGGAATTATTTGAAAGACATCGCAAAAAGGGGAAAATTTTTATTCGCCGA 258223 Query 9234 CGACATAGCTGGTTGGGACACACGGATAAGTCAGGCTGATCTAGCGGACGAGGAATTCCT 9293 ||||| ||||| |||||||| || || || | ||||| | |||||| ||| || Sbjct 258224 TGACATTGCTGGATGGGACACTCGTATTAGCTCTGAAGATCTGGAGGACGAAGAAACTCT 258283 Query 9294 GATT-CTGAGTATGATTGACGATCCATACCATCGTGC-CT--TGGCCGAGGCCGTTATGC 9349 | | |||| || | ||||| | ||| ||||| || | ||| || ||| Sbjct 258284 TCTAACGGAGT-TGGCTATTGATCCTTTCCACCGTGCACTAATATCCGCCACC---ATGA 258339 Query 9350 GATTTGCCTACCAAAATATCGTGGCTCTCTTCCCTCGCTCCCACAAGAAGTTTGGGAGTG 9409 || | || ||||| || ||||| | | ||||| || |||| || | ||| |||| Sbjct 258340 GACTCGCTTACCAGAACATCGTTGTCATGTTCCCACGAACCCATTCTAAATATGGCAGTG 258399 Query 9410 GGACGGTGATGGATGTAGTGTCGCGGTCCG-ATCAGCGGGGATCTGGCCAGGTTGTCACC 9468 | || ||||||||||| || | || | | | || || ||||| ||||| || || || Sbjct 258400 GAACTGTGATGGATGTTGT-TGGCAGAAGGGACCAACGCGGATCGGGCCAAGTCGTGACA 258458 Query 9469 TATGCACTAAACACCATAACGAATGGAAAGGTCCAGATTGGGAGGACCTTGGAGAGTGAG 9528 || || |||||||||||||| ||||||||||||||| ||| | | ||||||||||| Sbjct 258459 TACGCCCTAAACACCATAACCAATGGAAAGGTCCAGGTTGCCCGTATGTTGGAGAGTGAC 258518 Query 9529 GG 9530 || Sbjct 258519 GG 258520 Score = 185 bits (204), Expect = 6e-43 Identities = 295/416 (71%), Gaps = 8/416 (2%) Strand=Plus/Minus Query 9803 TCGTCCCCTGCCGGCACGAGGACGAGATCGTAGGGAGAAGCCGCATCCAGAAgggggggT 9862 |||| || ||| ||||||| || || || | || || ||| | ||||||| || || Sbjct 12521 TCGTGCCTTGCAGGCACGAAGATGAAATAATCGGCAGGAGCAGGCTCCAGAAAGGAGGTC 12462 Query 9863 TGGTTAGCATAGCTGAAAGCGCATGCCTGGCCAAGGCCCACGGACAAATGTGGGCTCTGT 9922 | || ||| ||||||| ||||| || ||||||||||| ||| |||||||||||| || | Sbjct 12461 TCGTGAGCTTAGCTGAGAGCGCCTGTATGGCCAAGGCCTACGCACAAATGTGGGCCCTAT 12402 Query 9923 ACTTTTTTCACCGGAGAGATCTGAGGATGGGCTTCGCAGCCATAAACGCGGCGGTTCCAA 9982 | || |||||||| | |||| |||| |||| ||| || |||| ||||| |||| Sbjct 12401 ATTTCTTTCACCGTCGGGATCAGAGGTTGGGGTTCTGTGCTATAACGTCGGCGATTCCCT 12342 Query 9983 TCAACTGGGTTCCGGAAGGCAGAACGTCATGGTCCATACACCAAAAGTTTGAGTGGATGA 10042 | ||| |||| | || |||| || |||||||| ||||| || ||||||||||| Sbjct 12341 CTGATTGGTTTCCTGTGGGGCGAACATCTTGGTCCATCCACCAGAATCATGAGTGGATGA 12282 Query 10043 CTACGGAGGACATGCTTGATGTTTGGAACCGGGTCTGGATCTTGAACAACCCATGGGTCA 10102 | || || || ||||| || ||||| || ||||| |||||||| ||||| Sbjct 12281 CCACTGATGATATGCTACGAGTGTGGAATGACGTTTGGATTAGCAACAACCCGTGGGT-- 12224 Query 10103 TG-GAC--AAGACGCCCCTATACTCATGGGGGGACATTCCATACCTTCATAAGAAACAGG 10159 || ||| |||| ||| | || |||| || || || ||| | |||||||| || | Sbjct 12223 TGCGACTAAAGA-GCCAGTCATGTCGTGGGATGAAATCCCGTACTTGCATAAGAAGCAAG 12165 Query 10160 ATATTGAGTGTGGAAGCCTAATTGGAAC-CAAGAGTAGGGCCACGTGGTCGCGAGA 10214 | || | |||||| || || || ||| | ||||| || || || ||| |||| || Sbjct 12164 ACATAGCGTGTGGTAGTCTCATAGGATCAAAAGAG-AGAGCTACCTGGGCGCGTGA 12110 >seq296 Length=5246318 Score = 242 bits (268), Expect = 3e-60 Identities = 700/1065 (66%), Gaps = 18/1065 (2%) Strand=Plus/Plus Query 8587 GGGGGACAGACAGTGAACCCTCTTGTCCGGAAGGTGATGTGGCCATGGGAGGCCGTGGGA 8646 || |||||| | || ||||| || || ||||| |||||||||| |||||| | || Sbjct 840214 GGAGGACAGGCTGTTAACCCGCTGGTTAGGAAGCTGATGTGGCCGTGGGAGACGGTCACT 840273 Query 8647 GGAGTGACGAGCTTCATGATGACAGATGTGTCGACGTACGCCCAGCAGAAAGTATTGCGT 8706 | || |||||| | ||||| || || || || || |||||||||| || |||| Sbjct 840274 AGCGTTGTCAGCTTCTTAATGACTGACGTCTCCACCTATTCCCAGCAGAAGGTTCTGCGG 840333 Query 8707 GAAAAGGTTGACACGGCTGT---CCCTGAGCCAAACGAC-CACCTGAAGATGGTGAACCG 8762 || ||||||||||| | | | ||| || || | || | |||| ||| Sbjct 840334 GAGAAGGTTGACACCGTTATTCCCCCCCCCCCCCCCGCCACAAATTCGTTTGGTTAACA- 840392 Query 8763 GAAG--ATAATGAGGCAAATGGCCCGGATGTTCCGTCGTCGCCGACTGGTCCCCAGGATC 8820 ||| |||| | | || | | ||||| ||| || ||| ||||| Sbjct 840393 -AAGCCATAACGCGCCACTTTGTTCGGATCTTCAAAGAGAAAAACCTCCGACCCCGGATC 840451 Query 8821 CTGTCACAAGAAGACTTCATTAGGAATGTCAGACCAGATGCAGCTATTGGGTCGTGGAGC 8880 || | | || || |||||| || || | ||||| || || || || |||||| Sbjct 840452 ATGACGAAGGAGGAATTCATTGCAAACGTACGTAATGATGCCGCCATAGGATCATGGAGC 840511 Query 8881 CAGGATGTCCCTTGGAGGAAGGTGAATGAGGCCCTCCAATCCCCAGAGTTTTGGGATTTG 8940 | ||| |||| ||||| | ||| | |||| | ||| || || ||| || | Sbjct 840512 CGCGATATCCCCTGGAGAGATGTGCAGGAGGTGGTGCAAGACCAGTCCTTCTGGAATCTT 840571 Query 8941 GTCATTAGGGAGCGAAACCTACACCTGACCGGTGATTGTGAGATGTGCATTTACAACACC 9000 || | ||||| ||||| ||| || | || | ||||| | || || || Sbjct 840572 GTTGGCCGAGAGCGTGCTCTACATCTGCAAGGGAAATGCAATATGTGTCTCTATAATACT 840631 Query 9001 ATGGGaaaaaaggagaaaaaaCCAGCTGTCGCAGGGGAGCCGAAGGGGTCGAGGACCATT 9060 ||||| ||||| || || || || | || || || ||| | ||||| || |||| || Sbjct 840632 ATGGGGAAAAAAGAAAAGAAGCCCGGAGTTGCTGGTGAGGCAAAGGGATCTCGGACTATC 840691 Query 9061 TGGTATATGTGGCTTGGCAGTCGCTATCTT-GAATACGAAGCCCTAGGTTTCCTCAATGA 9119 |||||||||||||| || || | | |||| || |||||||| || | ||||| || | Sbjct 840692 TGGTATATGTGGCTCGGGAGCAGAT-TCTTGGAGTACGAAGCGCTGGCGTTCCTGAACGC 840750 Query 9120 AGATCACTGGGTGTCACGGGAGAACTTCCCGGGAGGCGTTGGCGGACAGGGCGTGAACTA 9179 ||| |||||||| || ||||| ||||| ||||| |||||||| ||||| ||||| Sbjct 840751 AGACCACTGGGTCAGCCGTGAGAATTTCCCCGGAGGAGTTGGCGGTGTTGGCGTCAACTA 840810 Query 9180 CTTCGGCAATTACCTGAAAGAGATCGCAGGGAAGGGAAAGTATTTCATCGCGGACGACAT 9239 || |||||||| || || ||||| | | || |||||||| || | ||||| ||||| Sbjct 840811 TTTTGGCAATTATCTCAAGGAGATTTCCTGCAAAGGAAAGTACCTCTTTGCGGATGACAT 840870 Query 9240 AGCTGGTTGGGACACACGGATAAGTCAGGCTGATCTAGCGGACGAGGAA---TTCCTGAT 9296 |||||||||||||| | | || | ||||| | ||||||||| |||| | Sbjct 840871 TGCTGGTTGGGACACCAAGGTGAGCTCTGAGGATCTTGAAGACGAGGAAACTCTCCTCA- 840929 Query 9297 TCTGAGTATGATTGACGATCCATACCATCGTGCCTTGGCCGAGGCCGTTATGCGATTTGC 9356 | ||| | | | ||| | ||| ||| || ||| ||| | || Sbjct 840930 -CAGAG-CTCACCCCCAGTCCCTTTCATAAGGCCCTGATATCGGCAACCATGAAGCTAGC 840987 Query 9357 CTACCAAAATATCGTGGCTCTCTTCCCTCGCTCCCACAAGAAGTTTGGGAGTGGGACGGT 9416 ||||| ||| | || ||| | || ||||| |||| || | ||| || || || || Sbjct 840988 GTACCAGAATGTTGTCGCTATGTTTCCTCGAACCCATGTCAAATATGGTAGCGGAACCGT 841047 Query 9417 GATGGATGTAGTGTCGCGGTCCGATCAGCGGGGATCTGGCCAGGTTGTCACCTATGCACT 9476 |||||||| || || |||||||| | || || |||||||||||||| || || || Sbjct 841048 AATGGATGTTGTTGGAAGGACCGATCAGAGAGGTTCAGGCCAGGTTGTCACGTACGCCCT 841107 Query 9477 AAACACCATAACGAATGGAAAGGTCCAGATTGGGAGGACCTTGGAGAGTGAGGGCCTACT 9536 ||||| ||||| || ||||| ||||| || | |||| | || ||||| || | || Sbjct 841108 GAACACAATAACCAACGGAAAAGTCCAAATAGCTCGGACGCTAGAAAGTGAAGGATTGCT 841167 Query 9537 GGAAGCAGACGAGGAGGTAATCGAAAGGTGGCTAATCA-AGAATATGGAGCACCGGCTGG 9595 | || ||| || || || | ||||| ||| |||| ||||| | ||| | Sbjct 841168 CAATGCTGACCTTCCTGTCATTGAGCGATGGCT-CTCAGAGAACCTGGAGGATGTGCTCG 841226 Query 9596 CGAACATGGTGATTGCAGGCGATGACGTGGTGGTGGCGACCGACA 9640 |||||||| ||||| ||||| ||||| |||||| | ||| ||| Sbjct 841227 GAAACATGGTCATTGCTGGCGACGACGTAGTGGTGTCCACCAACA 841271 >seq65 Length=4361017 Score = 181 bits (200), Expect = 7e-42 Identities = 294/416 (71%), Gaps = 8/416 (2%) Strand=Plus/Minus Query 9803 TCGTCCCCTGCCGGCACGAGGACGAGATCGTAGGGAGAAGCCGCATCCAGAAgggggggT 9862 |||| || ||| ||||||| || || || | || || ||| | ||||||| | || Sbjct 2220088 TCGTGCCTTGCAGGCACGAAGATGAAATAATCGGCAGGAGCAGGCTCCAGAAAAGAGGTC 2220029 Query 9863 TGGTTAGCATAGCTGAAAGCGCATGCCTGGCCAAGGCCCACGGACAAATGTGGGCTCTGT 9922 | || ||| ||||||| ||||| ||| ||||||||||| ||| |||||||||||| || | Sbjct 2220028 TCGTGAGCTTAGCTGAGAGCGCCTGCATGGCCAAGGCCTACGCACAAATGTGGGCCCTAT 2219969 Query 9923 ACTTTTTTCACCGGAGAGATCTGAGGATGGGCTTCGCAGCCATAAACGCGGCGGTTCCAA 9982 | || |||||||| | |||| |||| |||| ||| || |||| ||||| |||| Sbjct 2219968 ATTTCTTTCACCGTCGGGATCAGAGGTTGGGGTTCTGTGCTATAACGTCGGCGATTCCCT 2219909 Query 9983 TCAACTGGGTTCCGGAAGGCAGAACGTCATGGTCCATACACCAAAAGTTTGAGTGGATGA 10042 | ||| |||| | || |||| || |||||||| ||||| || ||||||||||| Sbjct 2219908 CTGATTGGTTTCCTGTGGGGCGAACATCTTGGTCCATCCACCAGAATCATGAGTGGATGA 2219849 Query 10043 CTACGGAGGACATGCTTGATGTTTGGAACCGGGTCTGGATCTTGAACAACCCATGGGTCA 10102 | || || || ||||| || ||||| || ||||| ||||||| ||||| Sbjct 2219848 CCACTGATGATATGCTACGAGTGTGGAATGACGTTTGGATTAGCAACAACCTGTGGGT-- 2219791 Query 10103 TG-GAC--AAGACGCCCCTATACTCATGGGGGGACATTCCATACCTTCATAAGAAACAGG 10159 || ||| |||| ||| | || |||| || || || ||| | |||||||| || | Sbjct 2219790 TGCGACTAAAGA-GCCAGTCATGTCGTGGGATGAAATCCCGTACTTGCATAAGAAGCAAG 2219732 Query 10160 ATATTGAGTGTGGAAGCCTAATTGGAAC-CAAGAGTAGGGCCACGTGGTCGCGAGA 10214 | || | |||||| || || || ||| | ||||| || || || ||| |||| || Sbjct 2219731 ACATAGCGTGTGGTAGTCTCATAGGATCAAAAGAG-AGAGCTACCTGGGCGCGTGA 2219677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34712649064320