Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_001560.1 Length=11161 Score E Sequences producing significant alignments: (Bits) Value seq1802 230 2e-56 >seq1802 Length=132586 Score = 230 bits (254), Expect = 2e-56 Identities = 903/1389 (65%), Gaps = 42/1389 (3%) Strand=Plus/Minus Query 5784 TTTATGGATCGTTCAGACATTGGGGTCATCCTTTTATAGATTAT-TACACTGGACTAGAA 5842 |||| ||||| || ||||||||||| ||||| ||| | || ||| |||| ||||| || Sbjct 31595 TTTACGGATCATTTAGACATTGGGGGCATCCGTTTCTTGACTATCTACAA-GGACTCAAA 31537 Query 5843 AAATTACATTCCCAAGTAACCATGAAGAAAGATATTGATGTGTCATATGCAAAAGCACTT 5902 || |||||| ||| ||| | |||||| |||||| |||||| | ||| | Sbjct 31536 AAGTTACATGAACAAACAACTTTAAAGAAAACGATTGATCGAAGATATGCGCAGGCATTA 31477 Query 5903 GCAAGTGATTTAGCTCGGATTGTTCTATTTCAACAGTTCAATGATC-ATAAAAAGTGG-- 5959 |||||||| ||||| | ||||| || || | | |||| || | |||||| | Sbjct 31476 GCAAGTGACTTAGCACATATTGTG----TTGAAGAAT-CAAT--TCGACAAAAAGAAGAT 31424 Query 5960 TTCGTGAATGGAGACT----TGCTCCCTCATGATCATCC-CTTTAAAAGTCATGTTAAAG 6014 || || | | || || | | | | ||||| || || || | ||| ||| Sbjct 31423 TTGGTCAGTTGAAACCAATCTATTGCGAAAAGATCACCCTCTATATGACTCAA-TTACTC 31365 Query 6015 AAAATACATGGCCCACAGCTGCTCAAGTTCA-AGATTTTGGAGATAAATGGCATGAACTT 6073 ||||||||||||| || | ||| | ||| ||| ||||| ||| |||||||| ||| Sbjct 31364 AAAATACATGGCCTACTCCATTTCA-GATCAGAGACTTTGGGGATCAATGGCATACTCTT 31306 Query 6074 CCGCTGATTAAATGTTTTGAAATACCCGACTTACTAGACCCATCGATAATATACTCTGAC 6133 || ||| || |||||||| || ||||| | | || || |||| || |||| Sbjct 31305 CCTTTGAAAAAGTGTTTTGAGATCCCCGATGTGATCGATCCTAGTTTAATCTATGCTGAT 31246 Query 6134 AAAAGTCATTCAATGAATAGGTCAGAGGTGTTGAAACATGTCCGAATGAATCCGAACACT 6193 ||||| |||||||| | | |||| | | | ||||| ||| ||||||| | | Sbjct 31245 AAAAGCCATTCAATCACTTAATCAGCAATTCTAGAGCATGTAAGAAAATATCCGAATATT 31186 Query 6194 CCTATCCCTAGTAAAAAGGTGTTGCAGACTATGTTGGACACAAAGGCTACCAATTGGAAA 6253 || ||||| || ||||| | ||||| | | ||| || || | |||||| Sbjct 31185 CCGATCCCGTCAAAGAAGGTACTAGAGACTTTTATCAACAGTCCCGCAACAGAATGGAAA 31126 Query 6254 GAATTTCTTAAAGAGATTGATGAGAAGGGCTTAGATGATGATGATCTAATTATTGGTCTT 6313 ||| | |||||| | |||| | || ||||| || |||| |||| || | Sbjct 31125 ACCTTTTTGAAAGAGGTCAATGATCATGGTTTAGACCCGGAATATCTTGTTATCGGATTA 31066 Query 6314 AAAGGAAAGGAGAGGGAACTGAAGTTGGCAGGTAGATTTTTCTCCCTAATGTCTTGGAAA 6373 || |||||| | || | || |||||||||||| | || ||||| |||||| Sbjct 31065 CGGGGGAAGGAGCGAAAAATTAAAAGAATAGGTAGATTTTTTGCTCTTATGTCCTGGAAA 31006 Query 6374 TTGCGAGAATACTTTGTAATTACCGAATATTTGATAAAGACTCATTTCGTCCCTATGTTT 6433 || |||| || || ||||| || |||||||||| || ||||| || || ||||| Sbjct 31005 TTAAGAGATTATTTCGTAATAAC--AATATTTGATTAAAGTGCATTTTGTGCCATTGTTT 30948 Query 6434 AAAGGCCTGACAATGGCGGACGATCTAACTGCAGTCATTAAA-AAGATGTTAGATTCCTC 6492 || |||| ||||| || || || | | | || |||||| |||||||||||| | || Sbjct 30947 TCGGGATTGACTATGGCAGATGACCTTAATACTGT-ATTAAAGAAGATGTTAGATACTTC 30889 Query 6493 ATCCGGCCAAGGATTGAAGTCATATGAGGCAATTTGCATAGCCAATCACATTGATTACGA 6552 || ||||| || | |||||| || || || ||||| ||| |||| || Sbjct 30888 GAATGGTCAAGGGTTAGATGGATATGAATATATAACAATTGCTAATCATATTAATTATGA 30829 Query 6553 AAAATGGAATAACCACCAAAGGAAGTTATCAAACGGCCCAGTGTTCCGAGTTATGGGCCA 6612 ||| ||||| || || ||||| | | | ||| || || ||| ||| ||||| || Sbjct 30828 AAAGTGGAACAATCATCAAAGAGATGAAGCGAACAATCCTGTTTTCACAGTCATGGGACA 30769 Query 6613 GTTCTTAGGTTATCCATCCTTAATCGAGAGAACTCATGAATTTTTTGAGAAAAGTCTTAT 6672 || ||||| ||||| || ||| |||| |||||||| || | ||| | || Sbjct 30768 ATTTTTAGGGTATCCTAATTTGATCTCTCGAACCCATGAATTCTTCCAATCGAGTTTAAT 30709 Query 6673 ATACTACAATGGAAGACCAGACTTGATGCGTGTTCACAACAACACACTGATCAATTCAAC 6732 || ||||| ||||| || | ||| ||| | | | | | | | || ||| Sbjct 30708 TTATTACAACAATAGACCTGATCTAATGACAGTT-ATAGAAGCTCGTTTA-GAAAACAAA 30651 Query 6733 CTCCCAACGA-----GTTTGTTGGCAAGGACAAGAGGGTGGACTGGAAGGTCTACGGCAA 6787 ||| | || ||||| ||| | || |||| || ||||| || || || | ||| Sbjct 30650 GACCCTATGAAGAGGGTTTGCTGGAATGGTCAAGCAGGAGGACTAGAGGGGCTGAGACAA 30591 Query 6788 AAAGGATGGACTATCCTCAATCTACTGGTTATTCAAAGAGAGGCTAAAATCAGAAACACT 6847 |||||||| | |||| | || || | ||| ||||||| | |||| | ||| || Sbjct 30590 AAAGGATGAAGTATCGTTTAT-TA-TAAACATTAAAAGAGAAGGTAAAGTTGAAAATACG 30533 Query 6848 GCTGTCAAAGTCTTGGCACAAGGTGATAATCAAGTTATTTGCACACAGTATAAAACGAAG 6907 | | ||||||| ||||| |||||||||||| | || || || |||||| | || Sbjct 30532 AGACTTAGTATCTTGGCGCAAGGAGATAATCAAGTTGTCTGTACTCAATATAAACTGCAG 30473 Query 6908 AA-AT-CGAGAAACGTTGTAGAATTACAGGGTGCTCTCAATCAAATGGTTTCTAATAATG 6965 || || ||| || | | ||| || | | | || | ||| | || || || Sbjct 30472 AAGATACGATCAA-GCAAT-GAACTAGATGAATGTATCCAAAGAATTATATCAAACAACA 30415 Query 6966 AGAAAATTATGACTGCAATCAAAATAGGGAC--AGGGAAGTTAGGACTTTTGATAAATGA 7023 | ||||| |||| | || ||| ||| || | || | ||| | || || ||| | Sbjct 30414 ATAAAATAATGAGTAACATAGAAAAAGGAACTAATCGA--CTCGGATTGTTAATTAATCA 30357 Query 7024 CGATGAGACTATGCAATCTGCAGATTACTTGAATTATGGAAAAATACCGATTTTCCGTGG 7083 ||||| || ||| | || || ||||| ||||||||||| || | |||||||| ||||| Sbjct 30356 AGATGAAACCATGAAGTCAGCGGATTATTTGAATTATGGGAAGGTTCCGATTTTTCGTGG 30297 Query 7084 AGTGATTAGAGGGTTAGAGACCAAGAGATGGTCACGAGTGACTTGTGTCACCAATGACCA 7143 | | |||| | || | || |||||||| ||||| | ||| | | || || || Sbjct 30296 GAAAGTAAAAGGGATGGAATCAAAAAGATGGTC-CGAGTAGCATGTATGTCTAACGATCA 30238 Query 7144 AATACCCAC 7152 | |||| || Sbjct 30237 ATTACCTAC 30229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35597075949500