Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_002526.1 Length=14900 Score E Sequences producing significant alignments: (Bits) Value seq1802 304 1e-78 >seq1802 Length=132586 Score = 304 bits (336), Expect = 1e-78 Identities = 619/902 (69%), Gaps = 32/902 (4%) Strand=Plus/Minus Query 9962 CCAGCAACAAATTGGCCAGAATTTCTCAAGGCGGTGAATGATTATGGTTTAGATTGGGAA 10021 || |||||| | ||| | ||| | || | ||| |||||| |||||||||| |||| Sbjct 31143 CCCGCAACAGAATGGAAAACCTTTTTGAAAGAGGTCAATGATCATGGTTTAGACCCGGAA 31084 Query 10022 AAATTGGTAATTGGACTAAAGGCTAAGGAAAGAGAGCTTAAAGAAGAAGGGAGGtttttt 10081 | | || || ||| || || ||||| || | ||||| | ||| || |||||| Sbjct 31083 TATCTTGTTATCGGATTACGGGGGAAGGAGCGAAAAATTAAAAGAATAGGTAGATTTTTT 31024 Query 10082 tCATTAATGTCTTATGAATTAAGGGATTATTTTGTCTCAACGGAGTACTTAATaaaaaaa 10141 | | ||||| | ||||||| |||||||| || ||| | || || || ||| Sbjct 31023 GCTCTTATGTCCTGGAAATTAAGAGATTATTTCGTAATAAC--AATATTTGATTAAAGTG 30966 Query 10142 TACTTTGTGCCATTATTTGAAGGATTGACAATGGCTGATGACCTAAATACTGTTATCaaa 10201 | ||||||||||| ||| |||||||| ||||| |||||||| |||||||| | || Sbjct 30965 CATTTTGTGCCATTGTTTTCGGGATTGACTATGGCAGATGACCTTAATACTGTATTAAAG 30906 Query 10202 aaaaTGTTAGATGTCTCTAGTGGTCAGGGAACAAGGGAATATGAATACATCACAATTGCC 10261 || ||||||||| || | |||||| || | | ||||||||| || |||||||| Sbjct 30905 AAGATGTTAGATACTTCGAATGGTCAAGGGTTAGATGGATATGAATATATAACAATTGCT 30846 Query 10262 AATAATATTGATTATGAAAAATGGAATAACTATCAAAGAATTGAATCCAATGGGCCGGTG 10321 ||| ||||| |||||||||| ||||| || |||||||| |||| | || || || Sbjct 30845 AATCATATTAATTATGAAAAGTGGAACAATCATCAAAGAGATGAAGCGAACAATCCTGTT 30786 Query 10322 TTCACTGTGATGGGACGATTTTTAGGCTTGCCTAATTTGTTTACTAGAACTCATGAGTTT 10381 ||||| || ||||||| ||||||||| | ||||||||| | || |||| ||||| || Sbjct 30785 TTCACAGTCATGGGACAATTTTTAGGGTATCCTAATTTGATCTCTCGAACCCATGAATTC 30726 Query 10382 TTCCAAAAGAGTTTGATCTATTACAACCAAAGACCAGACCTCATGATGGTGAGAGGACGG 10441 |||||| |||||| || ||||||||| | ||||| || || |||| || | || | Sbjct 30725 TTCCAATCGAGTTTAATTTATTACAACAATAGACCTGATCTAATGACAGTTATAGAA--- 30669 Query 10442 GAATGTCT-GAACAGATTGGGAGT-----GAAAGTGTGTTGGGAAGGACAAAAGGGAGGA 10495 | || | ||| | | | | || || || ||| | || ||| |||||| Sbjct 30668 GCTCGTTTAGAAAACAAAGACCCTATGAAGAGGGTTTGCTGGAATGGTCAAGCAGGAGGA 30609 Query 10496 TTAGAAGGTTTGAGACAAAAGGGATGGAGCATATTAAATTATTTGATGATAGAGAGAGAA 10555 |||| || |||||||||| ||||| || || | |||| | | || | |||||| Sbjct 30608 CTAGAGGGGCTGAGACAAAAAGGATGAAGTATCGTTTATTA--TAAACATTAAAAGAGAA 30551 Query 10556 AGTAGAGTAAGAAACACAAGAGTTAAAATTCTTGCTCAAGGAGACAATCAGACAATCAGC 10615 ||| ||| ||| || ||| ||| || | || |||||||| ||||| || | Sbjct 30550 GGTAAAGTTGAAAATACGAGACTTAGTATCTTGGCGCAAGGAGATAATCAAGTTGTCTGT 30491 Query 10616 ATGTGTTATAAA--ACAGAGAGCTGGCAAAATGAGGAA-GAGTTAGATAACCATATCAAA 10672 | |||||| |||| || | | | || || || ||||| | |||| || Sbjct 30490 ACTCAATATAAACTGCAGA-AGATACGATCA--AGCAATGAACTAGATGAATGTATCCAA 30434 Query 10673 AATATGGTCTCCAATAACAATCAAATAATGCAAGCAATCAT---AAACGGGACTGAAAAG 10729 | || | || || |||||| |||||||| || || ||| ||| || ||| | Sbjct 30433 AGAATTATATCAAACAACAATAAAATAATG--AGTAA-CATAGAAAAAGGAACTAATCGA 30377 Query 10730 CTCGGATTGAGAATCAATTTGGATGAGACCATGACAAGT--GCTGATTATATAAATTATG 10787 ||||||||| ||| ||| ||||| |||||| |||| || |||||| | ||||||| Sbjct 30376 CTCGGATTGTTAATTAATCAAGATGAAACCATG--AAGTCAGCGGATTATTTGAATTATG 30319 Query 10788 GGAAAGTTCCTATAATT-GAGGGAACAATAAAGGGACTGCCAACAAAAAGATGGTCTCGA 10846 |||| ||||| || || | ||||| | |||| || || | ||||||||||||| ||| Sbjct 30318 GGAAGGTTCCGATTTTTCGTGGGAA-AGTAAAAGGGATGGAATCAAAAAGATGGTC-CGA 30261 Query 10847 GT 10848 || Sbjct 30260 GT 30259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 47557584953769