Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_008514.1 Length=11545 Score E Sequences producing significant alignments: (Bits) Value seq1802 246 2e-61 >seq1802 Length=132586 Score = 246 bits (272), Expect = 2e-61 Identities = 758/1142 (66%), Gaps = 63/1142 (6%) Strand=Plus/Minus Query 6191 GGATCTTTCAGACACTGGGGGCATCCATTCATTGATTACTTTGAGGGCCTCAAAAA---A 6247 ||||| || ||||| ||||||||||| || |||| || | | || |||||||| | Sbjct 31590 GGATCATTTAGACATTGGGGGCATCCGTTTCTTGACTATCTACAAGGACTCAAAAAGTTA 31531 Query 6248 C-TGAACAAGCAGGTCACGTTGCAAAAAGAGATAGATGACAAATATGCAAATGCATTAGC 6306 | ||||||| || || || | ||| ||| ||| | |||||| | |||||||| Sbjct 31530 CATGAACAAACA----ACTTTAAAGAAAACGATTGATCGAAGATATGCGCAGGCATTAGC 31475 Query 6307 AAGTGATCTGGCCTATATAGTCCTGAAGAAGGAATTTGACAAGAAGAAGCACTGGGCAGT 6366 |||||| | || |||| || ||||||| |||| ||||| |||||| ||| |||| Sbjct 31474 AAGTGACTTAGCACATATTGTGTTGAAGAATCAATTCGACAAAAAGAAGATTTGGTCAGT 31415 Query 6367 CAACAAAGAAGCAATGAGTGAGAAACATC-CATTCTACCAGCATGTCTC------TGAAC 6419 | || || | || | || ||| ||| | |||| ||| ||| | || Sbjct 31414 TGA-AACCAATCTATT-GCGA-AAAGATCACCCTCTAT----ATGACTCAATTACTCAAA 31362 Query 6420 ACACCTGGCCAACACCAAAACAAGT-AGACGACTTTGGAGACAACTGGCATAAACTGCCA 6478 | || ||||| || ||| || | ||| |||||||| || | ||||||| || || Sbjct 31361 ATACATGGCCTACTCCATTTCAGATCAGA-GACTTTGGGGATCAATGGCATACTCTTCCT 31303 Query 6479 CTTACAAAAGTGTTT-GAAATCCCAGACGTCATTGATCCGTCCATCATATACTCAGATAA 6537 | | |||||||||| || ||||| || || || ||||| | || || | ||||| Sbjct 31302 TTGA-AAAAGTGTTTTGAGATCCCCGATGTGATCGATCCTAGTTTAATCTATGCTGATAA 31244 Query 6538 GAGCCATTCCATGCAAAAATCAGAGGTGCTAGATAGTATCATGAACCATCCCAATACTCC 6597 |||||||| || |||||| | ||||| | | | || |||| |||| ||| Sbjct 31243 AAGCCATTCAATCACTTAATCAGCAATTCTAGAGCATGTAAGAAAATATCCGAATATTCC 31184 Query 6598 CATCCCAACTAAGAAAGTATTGTCCTCTCTCTTAGAGAAACCAGCAACAGACTGGCCGAA 6657 ||||| | ||||| ||| | || | | | | || |||||||| ||| | Sbjct 31183 GATCCCGTCAAAGAAGGTACTAGAGACTTTTATCAACAGTCCCGCAACAGAATGGAAAAC 31124 Query 6658 GTTTCT---AGAG-TCAGTAGATCTAAATGGGTTAGACGAAGAAGATCTGGTTATCGGAT 6713 ||| | |||| ||| | |||| |||| |||||| ||| |||| |||||||||| Sbjct 31123 CTTTTTGAAAGAGGTCAAT-GATC---ATGGTTTAGACCCGGAATATCTTGTTATCGGAT 31068 Query 6714 TGAAAGGGAAAGAAAGAGAATTAAAGAAAGCAGGACGTTTCTTCTCCCTTATGTCATGGA 6773 | ||||| || || || | || | | ||| | || || | |||||||| |||| Sbjct 31067 TACGGGGGAAGGAGCGAAAAATTAAAAGAATAGGTAGATTTTTTGCTCTTATGTCCTGGA 31008 Query 6774 AATTACGAGAGTATTTCGTCATGACAGAATATCTGATCAAACACCACTTTGTCCCACTAT 6833 ||||| |||| |||||||| || || ||||| |||| ||| || ||||| ||| | | Sbjct 31007 AATTAAGAGATTATTTCGTAATAAC--AATATTTGATTAAAGTGCATTTTGTGCCATTGT 30950 Query 6834 TTCATGGATTGACTATGGCGGATGACATGACTCAAGTTATGAAGAAAATGTTAGACA--- 6890 || |||||||||||||| |||||| | | | || | ||||| |||||||| | Sbjct 30949 TTTCGGGATTGACTATGGCAGATGACCTTAATACTGTATTAAAGAAGATGTTAGATACTT 30890 Query 6891 -GAA--GTCAAGGGCAAGGAGAGAATGACTACCAGAGAGTCAGTATTGCAAACCATATTG 6947 ||| |||||||| || | |||| || | | ||||| || |||||| Sbjct 30889 CGAATGGTCAAGGGTTAGATGGATATGAATA------TATAACAATTGCTAATCATATTA 30836 Query 6948 ACTATGAAAAGTGGAACAATCACCAAAGGAGA-GAATCAAATGGACCAACGTTTCGC-GT 7005 | |||||||||||||||||||| |||| |||| ||| | || | | |||| | || Sbjct 30835 ATTATGAAAAGTGGAACAATCATCAAA-GAGATGAAGCGAA-CAATCCTGTTTTCACAGT 30778 Query 7006 GATGGGACAATTCTTGGGCTATCCATCTTTGATCGAAAAGACGCATGAGTTCTTCGAGAA 7065 ||||||||||| || || ||||| ||||||| || ||||| |||||| | Sbjct 30777 CATGGGACAATTTTTAGGGTATCCTAATTTGATCTCTCGAACCCATGAATTCTTCCAATC 30718 Query 7066 AAGCCCGATATACTACAATGGCAGGCCGGATTTAATGCAAGTAACTGGAAACCAG----G 7121 || || || ||||| || || ||| ||||| ||| | | ||| | | | Sbjct 30717 GAGTTTAATTTATTACAACAATAGACCTGATCTAATGACAGTTA-TAGAAGCTCGTTTAG 30659 Query 7122 TGATCAACTCCACTGATAAACTTGTTTGCTGGCAGGGACAAAAGGGAGGGCTAGAGGGAC 7181 | ||| | || || ||||||||| | || ||| ||||| |||||||| | Sbjct 30658 AAAACAAAGACCCTATGAAGAGGGTTTGCTGGAATGGTCAAGCAGGAGGACTAGAGGGGC 30599 Query 7182 TAAGACAGAAAGGATGGAGCATTTTGAATCTGTTAATCATCAGGAGAGAGTCTAAAATCC 7241 | ||||| |||||||| || | | | | | ||| ||| | ||||| |||| | Sbjct 30598 TGAGACAAAAAGGATGAAG--TATCGTTTATTATAAACATTAAAAGAGAAGGTAAAGT-- 30543 Query 7242 GGAACACTCGAGTC-CAGACTC-TGGCGCAAGGAGACAATCAAGTCATTTGCACCCAATA 7299 ||| | |||| | || || ||||||||||||| |||||||| | || || ||||| Sbjct 30542 TGAAAATACGAGACTTAGTATCTTGGCGCAAGGAGATAATCAAGTTGTCTGTACTCAATA 30483 Query 7300 TA 7301 || Sbjct 30482 TA 30481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36825775020476