Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_011639.1 Length=13196 Score E Sequences producing significant alignments: (Bits) Value seq1802 215 4e-52 >seq1802 Length=132586 Score = 215 bits (238), Expect = 4e-52 Identities = 627/945 (66%), Gaps = 38/945 (4%) Strand=Plus/Minus Query 8332 CCTGCAACTGATTGGAAATCATTCTTGCAAAAGATAAATGACTTTGGATTAGATTTGAAG 8391 || ||||| || |||||| | || ||| || || | ||||| ||| ||||| | | Sbjct 31143 CCCGCAACAGAATGGAAAACCTTTTTGAAAGAGGTCAATGATCATGGTTTAGACCCGGAA 31084 Query 8392 TCTCTCATCATTGGACTAAAAGCTAAAGAAAGAGAAATGAAACGGATTGGAAGATTCTTC 8451 | ||| | || ||| || | || || || |||| ||| | || || ||||| || Sbjct 31083 TATCTTGTTATCGGATTACGGGGGAAGGAGCGAAAAATTAAAAGAATAGGTAGATTTTTT 31024 Query 8452 TCTTTAATGTCATGGGAACTCAGAGAGTATTTTGTTTTTACTGAGTACCTTATTAAGGAA 8511 || | ||||| ||| || | ||||| ||||| || | || | || | ||||| | Sbjct 31023 GCTCTTATGTCCTGGAAATTAAGAGATTATTTCGTAATAAC--AATATTTGATTAAAGTG 30966 Query 8512 TATTTTGTTCCTCTATTCCATGGATTAACTATGGCTGATGATCTACAATCTGTTATAAAG 8571 ||||||| || | || ||||| |||||||| ||||| || | |||| ||||| Sbjct 30965 CATTTTGTGCCATTGTTTTCGGGATTGACTATGGCAGATGACCTTAATACTGTATTAAAG 30906 Query 8572 AAGATGTTAGAAAATTCTCAAGGCCAAGGATCTAATGATTATGAGTATGTTTCAATAGCA 8631 ||||||||||| | ||| | || ||||| | ||| ||||| ||| | |||| || Sbjct 30905 AAGATGTTAGATACTTCGAATGGTCAAGGGTTAGATGGATATGAATATATAACAATTGCT 30846 Query 8632 AATCATATTGATTATGAAAAATGGAATAATCACCAAAGGAAAGAATCAAATTATTATGTT 8691 ||||||||| |||||||||| ||||| ||||| ||||| | ||| | || || |||| Sbjct 30845 AATCATATTAATTATGAAAAGTGGAACAATCATCAAAGAGATGAAGCGAACAATCCTGTT 30786 Query 8692 TTCAAAGTAATGGGCCAGTGTTTCGGTCTTCCAAACTTATTTACACGAACACATGAATTC 8751 |||| ||| ||||| || | ||| || ||| || || | | ||||| ||||||||| Sbjct 30785 TTCACAGTCATGGGACAATTTTTAGGGTATCCTAATTTGATCTCTCGAACCCATGAATTC 30726 Query 8752 TTTGAACAAAGTTTGATTTATTATCCTCAA-AGAGCTGATTTGATGCACGTT---GAAG- 8806 || || ||||| |||||||| | ||| ||| ||||| | ||| ||| |||| Sbjct 30725 TTCCAATCGAGTTTAATTTATTA-CAACAATAGACCTGATCTAATGACAGTTATAGAAGC 30667 Query 8807 GCGATACACTAACAAACTCGTCCGCATCA--CTGGTGTGTTGGAATGGACAAAAAGGGGG 8864 || | |||||| | || || | ||| || |||||||| ||| ||| || Sbjct 30666 TCGTTTAGAAAACAAA---GACCCTATGAAGAGGGTTTGCTGGAATGGTCAAGCAGGAGG 30610 Query 8865 TTTAGAAGGATTAAGACAAAAAGGATGGTCAGTATTAAATTATT-TAGTTATAGAAAGGG 8923 |||| || | |||||||||||||| |||| | ||||| || || |||| | Sbjct 30609 ACTAGAGGGGCTGAGACAAAAAGGATG--AAGTA-TCGTTTATTATAAACATTAAAAGAG 30553 Query 8924 AATCTAGGATAAGAAACACAAAGGTTAAAGTATTAGCACAAGGGGATAATCAAACAATCA 8983 || || | ||| || | ||| | || || ||||| ||||||||| || Sbjct 30552 AAGGTAAAGTTGAAAATACGAGACTTAGTATCTTGGCGCAAGGAGATAATCAAGTTGTCT 30493 Query 8984 GTACTTTTTATCATCTTCAGTCTCATTTTGACGA-AAATGAATTAA-TCGATCAAT-TGG 9040 ||||| ||| | || ||| || |||| || ||| || | ||| ||| | Sbjct 30492 GTACTCAATATAAACTGCAG-AAGAT----ACGATCAAGCAATGAACTAGATGAATGTAT 30438 Query 9041 CCAA-----TATTTGTAAGAATAATAAAGCTATTATGAATGCGATTGAAGCAGGGACAAC 9095 |||| ||| | || || |||||| || |||| | || ||| ||| || | Sbjct 30437 CCAAAGAATTATATCAAACAACAATAAA---ATAATGAGTAACATAGAAAAAGGAACTAA 30381 Query 9096 TAAATTGGGGTTGATAATAAATCGTGATGAGACTATGATAAGT--GCCGATTATTTAAAT 9153 | | | || ||| |||| |||| ||||| || ||| |||| || |||||||| ||| Sbjct 30380 TCGACTCGGATTGTTAATTAATCAAGATGAAACCATG--AAGTCAGCGGATTATTTGAAT 30323 Query 9154 TATGGGAAAGTCCCAATTTTTAGAGGGGTTATTAGAGGCTTGCATCTCAAAAGATGGTCA 9213 |||||||| || || |||||| | ||| | | ||| || | ||||||||||| Sbjct 30322 TATGGGAAGGTTCCGATTTTTCGTGGGAAAGTAAAAGGGATGGAATCAAAAAGATGGTC- 30264 Query 9214 AGAGTCAATTGTGTAACAAACGATCAAGTCCCATCTTTGAGTAAT 9258 |||| ||| | | ||||||||| | || | | |||||| Sbjct 30263 CGAGTAGCATGTATGTCTAACGATCAATTACCTACAATAAGTAAT 30219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 42105245267217