Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_017685.1 Length=14717 Score E Sequences producing significant alignments: (Bits) Value seq1802 201 1e-47 >seq1802 Length=132586 Score = 201 bits (222), Expect = 1e-47 Identities = 604/912 (66%), Gaps = 38/912 (4%) Strand=Plus/Minus Query 9796 TTTCTGAAAACAATCAATGATCATGGTTTGGATTGGGAAAAATTAGTAATAGGGTTGAAG 9855 ||| ||||| |||||||||||||||| || |||| | | || || || || | Sbjct 31122 TTTTTGAAAGAGGTCAATGATCATGGTTTAGACCCGGAATATCTTGTTATCGGATTACGG 31063 Query 9856 GCTAAAGAAAGAGAATTAAAAATTGATGGCAGATTCTTCTCATTAATGTCATATGATATG 9915 | || || || || | |||| || ||||| || | | ||||| | | | Sbjct 31062 GGGAAGGAGCGAAAAATTAAAAGAATAGGTAGATTTTTTGCTCTTATGTCCTGGAAATTA 31003 Query 9916 AGAGATTATTTTGTTATAACGGAGTATCTGATaaaaaaaTACTATGTTCCATTATTCAAA 9975 ||||||||||| || ||||| | ||| |||| ||| | | ||| ||||| || Sbjct 31002 AGAGATTATTTCGTAATAAC--AATATTTGATTAAAGTGCATTTTGTGCCATTGTTTTCG 30945 Query 9976 GGATTAACAATGGCTGATGACCAAAATACTGTTGTCaaaaaaaTGTTAAAAGTATCTAAA 10035 ||||| || ||||| ||||||| |||||||| | || || |||||| | || || Sbjct 30944 GGATTGACTATGGCAGATGACCTTAATACTGTATTAAAGAAGATGTTAGATACTTCGAAT 30885 Query 10036 GGACAGGGCCT-GATTGATTACAAAGAGATTACGATCGCTAATCATTTGGATTATGAGAA 10094 || || || | ||| ||| | || | || || || ||||||||| | ||||||| || Sbjct 30884 GGTCAAGGGTTAGATGGAT-ATGAATATATAACAATTGCTAATCATATTAATTATGAAAA 30826 Query 10095 GTGGAATAACTATCAAAGAAAAGAGTCCAATGGCCCTGTGTTCCGAGTCATGGGTCAATT 10154 |||||| || |||||||| | || | || ||||| ||| ||||||||| ||||| Sbjct 30825 GTGGAACAATCATCAAAGAGATGAAGCGAACAATCCTGTTTTCACAGTCATGGGACAATT 30766 Query 10155 TTTGGGCTTACCTAATTTAATAGAAAGAACTCATGAGTTTTTTGAAAAAAGTCTTATTTA 10214 ||| || | |||||||| || |||| ||||| || || || ||| | ||||| Sbjct 30765 TTTAGGGTATCCTAATTTGATCTCTCGAACCCATGAATTCTTCCAATCGAGTTTAATTTA 30706 Query 10215 TTACAATGGGAGGCCTGACTTGATGACAGTGCGTGGTAAAGAAG-TGATCT--CAAATAA 10271 |||||| || ||||| | |||||||| || ||||| | | | ||| || Sbjct 30705 TTACAACAATAGACCTGATCTAATGACAGT------TATAGAAGCTCGTTTAGAAAACAA 30652 Query 10272 AG-----GGGAAG-TTGTTTGTTGGGAGGGTCAAAAAGGAGGCTTAGAAGGATTGAGACA 10325 || |||| ||||| ||| | |||||| |||||| |||| || ||||||| Sbjct 30651 AGACCCTATGAAGAGGGTTTGCTGGAATGGTCAAGCAGGAGGACTAGAGGGGCTGAGACA 30592 Query 10326 AAAAGGGTGGAGTGTTCTCAATTGCCTAATGATCGAACGGGAATCAAAGATACGAAATAC 10385 |||||| || ||| | | ||| ||| || || | ||| || | |||||| Sbjct 30591 AAAAGGATGAAGTATCGTTTATT--ATAAACATTAAAAGAGAAGGTAAAGTTGAAAATAC 30534 Query 10386 TCAAATAGGACTCTTGGCCCAAGGAGACAATCAAGTAATTACTACTCACTATAAGACAGA 10445 | | | ||||||| |||||||| |||||||| | |||||| ||||| || | Sbjct 30533 GAGACTTAGTATCTTGGCGCAAGGAGATAATCAAGTTGTCTGTACTCAATATAA-ACTGC 30475 Query 10446 ACCATATCAAACTGAAG--AAGAATTACATACGCATATAAACAA--CATTATTGCAAACA 10501 | | || | | ||| | ||| || || | || || ||| ||||| |||||| Sbjct 30474 AGAAGAT-ACGATCAAGCAATGAACTAGAT--GAATGTATCCAAAGAATTATATCAAACA 30418 Query 10502 ACAATAAGATAATGGACGCCATATTGGAGGGGACTGAAAAACTAGGACTCAAAATTAATA 10561 ||||||| |||||| |||| | || ||| | ||| ||| | ||||||| Sbjct 30417 ACAATAAAATAATGAGTAACATAGAAAAAGGAACTAATCGACTCGGATTGTTAATTAATC 30358 Query 10562 TGGATGAGACTATCCAAAGT--GCAGACTATATAAACTATGGCAAGGTTCCAATTTACAG 10619 ||||| || || |||| || || ||| | || ||||| |||||||| |||| | Sbjct 30357 AAGATGAAACCAT--GAAGTCAGCGGATTATTTGAATTATGGGAAGGTTCCGATTTTTCG 30300 Query 10620 AGGAAACATATTAGGG-TTGAATCAAAAAAGATGGT-CAAGGGTTAATTATGTCAGCAAT 10677 || || || |||| | ||||| ||||||||||| | || | |||||| || Sbjct 30299 TGGGAAAGTAAAAGGGATGGAATC-AAAAAGATGGTCCGAGTAGCATGTATGTC--TAAC 30243 Query 10678 GATCAATTACCT 10689 |||||||||||| Sbjct 30242 GATCAATTACCT 30231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 46972034388840