Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_017714.1 Length=15867 Score E Sequences producing significant alignments: (Bits) Value seq1802 275 6e-70 >seq1802 Length=132586 Score = 275 bits (304), Expect = 6e-70 Identities = 695/1043 (67%), Gaps = 29/1043 (3%) Strand=Plus/Minus Query 10762 GATTTTGGAGACAACTGGCATAGACTGCCATTGATTAAATGTTTTGATATTCCTGATATG 10821 || ||||| || | ||||||| || || |||| || |||||||| || || ||| || Sbjct 31332 GACTTTGGGGATCAATGGCATACTCTTCCTTTGAAAAAGTGTTTTGAGATCCCCGATGTG 31273 Query 10822 ATTGACCCCAGTATAATATACAGTGATAAATCTCATTCTATTAATAGATCAGAAGTAATG 10881 || || || ||| |||| || ||||||| ||||| || | | ||||| | | | Sbjct 31272 ATCGATCCTAGTTTAATCTATGCTGATAAAAGCCATTCAATCACTTAATCAGCAATTCTA 31213 Query 10882 AAACATATTCGAGAAAAACCAAACAAACCTATACCAACAA-GAAGAGTACTGAAAACATT 10940 | ||| | || || | || || | || || || ||| |||| ||||| | || || Sbjct 31212 GAGCATGTAAGAAAATATCCGAATATTCCGATCCCGTCAAAGAAG-GTACTAGAGACTTT 31154 Query 10941 ATTAGAGAAACCTGCGACAATTTGGCCTGAATTTCTTAAAAAAGTCAATGATTTTGGATT 11000 | | | || || ||| ||| ||| | ||| | ||||||||| ||| || Sbjct 31153 TATCAACAGTCCCGCAACAGAATGGAAAACCTTTTTGAAAGAGGTCAATGATCATGGTTT 31094 Query 11001 GGATTGGGAGAGTTTGGTAATTGGGTTAAAAGCAAAGGAAAGGGAA-TTGAAGGATGCAG 11059 || ||| | | || || || ||| | ||||| | || || || || || Sbjct 31093 AGACCCGGAATATCTTGTTATCGGATTACGGGGGAAGGAGCGAAAAATTAAAAGAAT-AG 31035 Query 11060 GTAGATTCTTTTCATTGATGAGTTGGGAGTTAAGAGAGTATTTTGTATTCACAGAGTATT 11119 ||||||| ||| | | ||| ||| | |||||||| ||||| ||| | ||| |||| Sbjct 31034 GTAGATTTTTTGCTCTTATGTCCTGGAAATTAAGAGATTATTTCGTAATAACAA--TATT 30977 Query 11120 TGATTAAAGAACATTTTGTGCCATTATTCAAAGGATTAACTATGGCAGATGATCTACAAA 11179 ||||||||| |||||||||||||| || ||||| |||||||||||||| || | | Sbjct 30976 TGATTAAAGTGCATTTTGTGCCATTGTTTTCGGGATTGACTATGGCAGATGACCTTAATA 30917 Query 11180 CTGTAATTAAAAAGATGATTGATGTATCAGCAGGACAAGGTACTGAAACCTATGAAAACA 11239 ||||| | || |||||| | ||| || || ||||| || |||||| | | Sbjct 30916 CTGTATTAAAGAAGATGTTAGATACTTCGAATGGTCAAGGGTTAGATGGATATGAATATA 30857 Query 11240 TAACAATAGCGAATAATATTGACTATGAGAAGTGGAATAATTATCAAAGATATGATTCAA 11299 ||||||| || ||| ||||| | ||||| |||||||| ||| |||||||| |||| | | Sbjct 30856 TAACAATTGCTAATCATATTAATTATGAAAAGTGGAACAATCATCAAAGAGATGAAGCGA 30797 Query 11300 ATAGTGCAATTTTCACTGTCATGGGACAATTTTTAGGGTATCCAAAGTTAATAGCAAGAA 11359 | | | | ||||||| |||||||||||||||||||||||||| || || || | ||| Sbjct 30796 ACAATCCTGTTTTCACAGTCATGGGACAATTTTTAGGGTATCCTAATTTGATCTCTCGAA 30737 Query 11360 CTCATGAGTTTTTTGAGAAAAGCCTGATCTACTATAATCAGAGACCAGATCTGATGAGAG 11419 | ||||| || || | || | || || || || | ||||| ||||| |||| || Sbjct 30736 CCCATGAATTCTTCCAATCGAGTTTAATTTATTACAACAATAGACCTGATCTAATGACAG 30677 Query 11420 TTGTTGGAAATGAGGTAGTGAGCATGGAC---AACAAAAAAGTTGCTTGGGAGGGACAAA 11476 || | | | | ||| | || ||| | || | ||| ||| | || ||| Sbjct 30676 TTATAGAAGCTCGTTTAGAAAACAAAGACCCTATGAAGAGGGTTTGCTGGAATGGTCAAG 30617 Query 11477 AGGGGGGATTAGAAGGTCTGAGACAAAAAGGGTGGAGTGTAGTAAATCTTCTAATGATTG 11536 || ||| |||| || |||||||||||||| || ||| | || | || ||| ||| Sbjct 30616 CAGGAGGACTAGAGGGGCTGAGACAAAAAGGATGAAGTATCGT--TTATTATAAACATTA 30559 Query 11537 AGAGAGAAGTAAAAATACGAAATAC----ATTGGTAAAAGTGTTAGCGCAGGGAGACAAT 11592 | ||||||| ||| | |||||| || ||| | || ||||| ||||| ||| Sbjct 30558 AAAGAGAAGGTAAAGTTGAAAATACGAGACTTAGTA----TCTTGGCGCAAGGAGATAAT 30503 Query 11593 CAAACAATCACTACTCACTATAAAACTGAAACTTTTCATAATGATGCA--GAATTACAAG 11650 ||| || |||||| ||| |||||| | | | || | ||| ||| || | | Sbjct 30502 CAAGTTGTCTGTACTCAATAT-AAACTGCAGAAGAT-ACGATCAAGCAATGAACTAGATG 30445 Query 11651 AGCATAT---AAGACATATTGTAAATAATAATAATGCAATTATGGAAAGCATAGTTATCG 11707 | ||| |||| ||| ||| || ||||| ||| ||| | ||||| | | Sbjct 30444 AATGTATCCAAAGAATTATATCAAACAACAATAA---AATAATGAGTAACATAGAAAAAG 30388 Query 11708 GAACAAGGAGACTAGGACTAAAAATCAATGAGGATGAGACTATGCAATCACCAGACTATA 11767 |||| | |||| ||| | ||| ||| | ||||| || ||| | ||| | || ||| Sbjct 30387 GAACTAATCGACTCGGATTGTTAATTAATCAAGATGAAACCATGAAGTCAGCGGATTATT 30328 Query 11768 TAAATTATGGGAAGGTTCCAATT 11790 | ||||||||||||||||| ||| Sbjct 30327 TGAATTATGGGAAGGTTCCGATT 30305 Score = 78.8 bits (86), Expect = 9e-11 Identities = 130/185 (70%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 12897 TAAAAAAGGTCCTTACAATCCTTATTTAGGGTCAAAGACTAAGGAGAGCACGAGTATATT 12956 ||| ||||| |||||||| | |||||||||||||| || || || || | | | Sbjct 29202 TAAGAAAGGACCTTACAAGGCATATTTAGGGTCAAAAACATGTGAAAGTACTTCTCTTCT 29143 Query 12957 GCAACCTTGGGAAAAAGAGTCAAACATACCTGTTATAAAACGTGCAAGTGATTTGAGGAA 13016 |||| |||||| | ||| |||| ||||| | || | | | ||| |||||| || || Sbjct 29142 AAAACCGTGGGAATATGAGACAAAAATACCATTAATTAGAAGAGCATCTGATTTAAGAAA 29083 Query 13017 AGCTATTTCA-TGGTTTATTAAAGAGGATTCAAACTTAGCAAAATCTATTTTCAAAAATT 13075 ||| || || |||||| | || || |||||||| | ||| || || |||| |||| Sbjct 29082 GGCT-TTCCATTGGTTTGTAGAACCTGAGTCAAACTTGGGAAAGTCAATAATCAATAATT 29024 Query 13076 TGGAA 13080 | ||| Sbjct 29023 TAGAA 29019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 50651723731290