Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_020803.1 Length=11487 Score E Sequences producing significant alignments: (Bits) Value seq1802 178 9e-41 >seq1802 Length=132586 Score = 178 bits (196), Expect = 9e-41 Identities = 558/858 (65%), Gaps = 15/858 (2%) Strand=Plus/Minus Query 6385 GACTTTGGAGACAACTGGCACAAGTTACCCCTGATAAAGATATTCGAAATACCAGACTTG 6444 |||||||| || | ||||| | | || ||| |||| || || || || || || Sbjct 31332 GACTTTGGGGATCAATGGCATACTCTTCCTTTGAAAAAGTGTTTTGAGATCCCCGATGTG 31273 Query 6445 ATTGATCCATCTGTTATATATTCGGACAAGAGTCATTCTATGGGTAGATCTGAAGTGCTA 6504 || ||||| | | || ||| | || || || ||||| || | ||| | | | ||| Sbjct 31272 ATCGATCCTAGTTTAATCTATGCTGATAAAAGCCATTCAATCACTTAATCAGCAATTCTA 31213 Query 6505 GAGCATGTAGAGCGAAAACCACACCAG-CCAATTCCAACCAAGAAAGTTCTAGAGACGCT 6563 ||||||||| || || | | | | || || || | ||||| || |||||||| | Sbjct 31212 GAGCATGTA-AGAAAATATCCGAATATTCCGATCCCGTCAAAGAAGGTACTAGAGACTTT 31154 Query 6564 GTTAAAGAAGCCAGCGACCAATTGGCCAGAATTTTTGTCAAGGATTGAGGAAGATGGACT 6623 | || | || || || | ||| | |||||| | | | | || |||| | Sbjct 31153 TATCAACAGTCCCGCAACAGAATGGAAAACCTTTTTGAAAGAGGTCAATGATCATGGTTT 31094 Query 6624 ACCCAAAGAGTCTCTGATCATAGGCTTAAAAGGGAAAGAACGTGAATTAAAAAAGGCAGG 6683 | | || | ||| | || || ||| ||||| || || || | |||| ||| Sbjct 31093 AGACCCGGAATATCTTGTTATCGGATTACGGGGGAAGGAGCGAAAAATTAAAAGAATAGG 31034 Query 6684 ACGGTTCTTCTCTCTGATGTCATGGGAATTGAGAGAATATTTTGTAATAACAGAATACTT 6743 | || || |||| ||||| ||| |||| ||||| ||||| ||||||||| ||| || Sbjct 31033 TAGATTTTTTGCTCTTATGTCCTGGAAATTAAGAGATTATTTCGTAATAACA--ATATTT 30976 Query 6744 AATCAAGACACACTATGTGCCCTTATTCAAAGGGTTAACCATGGCAGATGATATGACGGA 6803 || || || | |||||| || || || || || ||||||||||| | | Sbjct 30975 GATTAAAGTGCATTTTGTGCCATTGTTTTCGGGATTGACTATGGCAGATGACCTTAATAC 30916 Query 6804 AGTTGTAAAGAAAATGCTAGAAAGGAGTCAAGGGCAGGGAGAAGATGACTACGAGCACAT 6863 || ||||||| ||| |||| | | || || || ||||| || || | || Sbjct 30915 TGTATTAAAGAAGATGTTAGATACTTCGAATGGTCAAGGGTTAGATGGATATGAATATAT 30856 Query 6864 CAGCATTGCCAACCACATTGACTATGAGAAGTGGAATAATCATCAGAGAAAGGAATCAAA 6923 | ||||| || || ||| | ||||| |||||||| |||||||| ||| | ||| | || Sbjct 30855 AACAATTGCTAATCATATTAATTATGAAAAGTGGAACAATCATCAAAGAGATGAAGCGAA 30796 Query 6924 TGGGCCTGTGTTCAGAGTCATGGGACAATTCCTAGGATATCCCAGTTTGATCGAAAAAAC 6983 ||||| |||| ||||||||||||||| |||| ||||| | ||||||| ||| Sbjct 30795 CAATCCTGTTTTCACAGTCATGGGACAATTTTTAGGGTATCCTAATTTGATCTCTCGAAC 30736 Query 6984 TCATGACTTTTTTCAAGACAGCTTGATTTATTACAATGGGAGACCAGACCTGATGGAAGT 7043 ||||| || || ||| || || ||||||||||| ||||| || || ||| ||| Sbjct 30735 CCATGAATTCTTCCAATCGAGTTTAATTTATTACAACAATAGACCTGATCTAATGACAGT 30676 Query 7044 GAGGGGGAATGAATTATTGAACAAAACAGAC------AAGCTTGTCTGTTGGGATGGTCA 7097 | ||| | | ||| || | |||| ||| || || ||| ||||||| Sbjct 30675 TA--TAGAAGCTCGTTTAGAA-AACAAAGACCCTATGAAGAGGGTTTGCTGGAATGGTCA 30619 Query 7098 GGCTGGAGGACTGGAAGGACTGAGACAAAAGGGATGGAGCATATTGAATCTACTTGTGAT 7157 || |||||||| || || ||||||||||| ||||| || ||| | | | | || Sbjct 30618 AGCAGGAGGACTAGAGGGGCTGAGACAAAAAGGATGAAG--TATCGTTTATTATAAACAT 30561 Query 7158 TCAGAGAGAGTCCAAAATCAGAAACACCAAAGTGCAAACATTGGCTCAGGGAGACAATCA 7217 | | ||||| ||| | ||| || | | | | ||||| || ||||| ||||| Sbjct 30560 TAAAAGAGAAGGTAAAGTTGAAAATACGAGACTTAGTATCTTGGCGCAAGGAGATAATCA 30501 Query 7218 AGTTGTTTGCACCCAATA 7235 |||||| || || ||||| Sbjct 30500 AGTTGTCTGTACTCAATA 30483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36640190264964