Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22]
7,301 sequences; 406,468,287 total letters
Query= NC_020805.1
Length=11120
Score E
Sequences producing significant alignments: (Bits) Value
seq1802 282 3e-72
>seq1802
Length=132586
Score = 282 bits (312), Expect = 3e-72
Identities = 744/1124 (66%), Gaps = 24/1124 (2%)
Strand=Plus/Minus
Query 6040 GATCCAAGATTTTGGAGATCACTGGCATGAGCTCCCATTAATTCAATGCTTCGACATACC 6099
|||| ||| ||||| ||||| |||||| || || || | | || || || || ||
Sbjct 31339 GATCAGAGACTTTGGGGATCAATGGCATACTCTTCCTTTGAAAAAGTGTTTTGAGATCCC 31280
Query 6100 TGATCTGATTGATCCATCCATTATCTACTCAGACAAGAGCCATTCCATGAATCGATCAGA 6159
||| |||| ||||| | ||||| | || || |||||||| || | | |||||
Sbjct 31279 CGATGTGATCGATCCTAGTTTAATCTATGCTGATAAAAGCCATTCAATCACTTAATCAGC 31220
Query 6160 GGTGTTAAATCATGTAAGAACCAAGCCTCATACACCGATTCCAAGCAAGAAAGTTTTAGA 6219
| || | |||||||||| | || ||| ||||| || ||||| || ||||
Sbjct 31219 AATTCTAGAGCATGTAAGAAAATATCCGAATATTCCGATCCCGTCAAAGAAGGTACTAGA 31160
Query 6220 GAGTATGATCGACAAACCAGCGACAAATTGGCTTGAGTTTCTTGAAGAGATCGACAAAAA 6279
|| | | ||| ||| || || ||| | ||| ||| | ||||| || | | |
Sbjct 31159 GACTTTTATCAACAGTCCCGCAACAGAATGGAAAACCTTTTTGAAAGAGGTCAATGATCA 31100
Query 6280 TGGATTATCTGATGAGGATTTGGTGATCGGATTAAAAGGAAAAGAAAGAGAACTGAAGAT 6339
||| ||| || || | || ||||||||| || || || || || | || |
Sbjct 31099 TGGTTTAGACCCGGAATATCTTGTTATCGGATTACGGGGGAAGGAGCGAAAAATTAAAAG 31040
Query 6340 TGCAGGTAGATTTTTCTCATTGATGTCTTGGAAGCTTAGGGAATACTTTGTTGTCACAGA 6399
|||||||||||| | | ||||| ||||| | || || || || || | |||
Sbjct 31039 AATAGGTAGATTTTTTGCTCTTATGTCCTGGAAATTAAGAGATTATTTCGTAATAACAA- 30981
Query 6400 GTATTTGATCAAGACTCACTTTGTGCCATTGTTCCATGGGCTGACCATGGCTGATGATAT 6459
|||||||| || || |||||||||||||| || |||| ||||| ||||| |
Sbjct 30980 -TATTTGATTAAAGTGCATTTTGTGCCATTGTTTTCGGGATTGACTATGGCAGATGACCT 30922
Query 6460 GACAGCAGTGATCAAAAAGATGCTGGAAAGCTCGTCTGGTCAAGGGCTAACAAACTACGA 6519
| | || | || |||||| | || | ||| |||||||||| || || ||
Sbjct 30921 TAATACTGTATTAAAGAAGATGTTAGATACTTCGAATGGTCAAGGGTTAGATGGATATGA 30862
Query 6520 CAGCGTTTGTATTGCAAATCATATTGACTATGAAAAATGGAATAATCATCAACGAAA--- 6576
| ||||| ||||||||| | |||||||| ||||| ||||||||| || |
Sbjct 30861 ATATATAACAATTGCTAATCATATTAATTATGAAAAGTGGAACAATCATCAAAGAGATGA 30802
Query 6577 ATTGTCCAATGGACCTGTGTTTAAAGTCATGGGACAATTCTTGGGTTATCCAAATTTGAT 6636
| | |||| ||||| || | ||||||||||||||| || || ||||| ||||||||
Sbjct 30801 AGCGAACAAT---CCTGTTTTCACAGTCATGGGACAATTTTTAGGGTATCCTAATTTGAT 30745
Query 6637 ATACCGGACACATGAGTTTTTTGAGAAAAGTTTAATTTACTATAATGAAAGACCGGATCT 6696
| || || ||||| || || | ||||||||||| || || | ||||| |||||
Sbjct 30744 CTCTCGAACCCATGAATTCTTCCAATCGAGTTTAATTTATTACAACAATAGACCTGATCT 30685
Query 6697 CATGAAAGTCAGAAATGGGATCTTAGAAA--ATAGCACACAT-CAGAGGGTTTGCTGGAA 6753
|||| ||| | | | | ||||||| | || | || ||||||||||||||||
Sbjct 30684 AATGACAGTTATAGAAGCTCGTTTAGAAAACAAAGACCCTATGAAGAGGGTTTGCTGGAA 30625
Query 6754 TGGACAGGCAGGTGGTTTAGAAGGTTTGAGACAGAAAGGATGGAGTATTCTTAATTTGCT 6813
||| || ||||| || |||| || ||||||| |||||||| ||||| || ||| |
Sbjct 30624 TGGTCAAGCAGGAGGACTAGAGGGGCTGAGACAAAAAGGATGAAGTATCGTTTATT--AT 30567
Query 6814 GGTCATACAGAGAGAAGCGAAAATCCGGAATACCGCAGTTAAAGTGCTAGCACAAGGCGA 6873
||| | ||||||| ||| | ||||| | ||| | | || ||||| ||
Sbjct 30566 AAACATTAAAAGAGAAGGTAAAGTTGAAAATACGAGACTTAGTATCTTGGCGCAAGGAGA 30507
Query 6874 CAATCAAGTCATATGTACACAGTACAA----GACCAAACAGTATCGAAACGAT-ATCGAG 6928
|||||||| | ||||| || || || | | | | ||| || | || | | ||
Sbjct 30506 TAATCAAGTTGTCTGTACTCAATATAAACTGCAGAAGATACGATC-AAGCAATGAACTAG 30448
Query 6929 TTGAGACAAGCCTTAAACCAAATGGCAGCAAACAATGATGTCATCATGAAGGCCATAGAG 6988
||| | || ||| ||| | ||||||| || || |||| ||||||
Sbjct 30447 ATGAATGTATCC--AAA--GAATTATATCAAACAACAATAAAATAATGAGTAACATAGAA 30392
Query 6989 TCAGGAACCAATAAGTTGGGTTTGTTGATCAATCAGGATGAGACGATGCAATCTGCTGAT 7048
|||||| ||| | || ||||| || ||||| ||||| || ||| | || || |||
Sbjct 30391 AAAGGAACTAATCGACTCGGATTGTTAATTAATCAAGATGAAACCATGAAGTCAGCGGAT 30332
Query 7049 TATCTGAACTATGGGAAGGTACCTATCTTTAGAGGAGTAATCAGAGGGCTGGAAACAAAG 7108
||| |||| ||||||||||| || || ||| | || | | | |||| ||||| ||||
Sbjct 30331 TATTTGAATTATGGGAAGGTTCCGATTTTTCGTGGGAAAGTAAAAGGGATGGAATCAAAA 30272
Query 7109 CGATGGTCCCGAGTCACTTGTGTGACAAATGACCAATTACCAAC 7152
|||||| |||||| | ||| || | || || |||||||| ||
Sbjct 30271 AGATGGT-CCGAGTAGCATGTATGTCTAACGATCAATTACCTAC 30229
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 35465886725776
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |