Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_022580.1 Length=12676 Score E Sequences producing significant alignments: (Bits) Value seq1802 159 3e-35 >seq1802 Length=132586 Score = 159 bits (176), Expect = 3e-35 Identities = 534/820 (65%), Gaps = 27/820 (3%) Strand=Plus/Minus Query 7755 GGTCGATTTTTCTCTTTAATGTCATGGGAATTACGGGAATATTTTGTTGTAACAGAATAC 7814 ||| ||||||| || | ||||| ||| ||||| | || ||||| || ||||| ||| Sbjct 31035 GGTAGATTTTTTGCTCTTATGTCCTGGAAATTAAGAGATTATTTCGTAATAACA--ATAT 30978 Query 7815 TTAATTAAAGAGCATTTTGTTCCATTGTTCCATGGATTAACGATGGCAGATGATTTAACC 7874 || ||||||| ||||||||| |||||||| ||||| || ||||||||||| | | Sbjct 30977 TTGATTAAAGTGCATTTTGTGCCATTGTTTTCGGGATTGACTATGGCAGATGACCTTAAT 30918 Query 7875 ACTGTGATGAAAAAGATGCTGGACAATAC-AATCGGCCAAGGTGGCAAGGACTACACACA 7933 ||||| | || |||||| | || | | | ||| | | | ||| | ||| || | | Sbjct 30917 ACTGTATTAAAGAAGATGTTAGATACTTCGAATGGTCAAGGGTTAGATGGA-TATGAATA 30859 Query 7934 AATTTGCATAGCCAATCACTTTGATTATGAGAAATGGAACAATCATCAGAGGAAGGAATC 7993 || || || ||||| || ||||||| || |||||||||||||| || | ||| | Sbjct 30858 TATAACAATTGCTAATCATATTAATTATGAAAAGTGGAACAATCATCAAAGAGATGAAGC 30799 Query 7994 TANNNNNNNNNNNNNNNNNNNNATGGGGCAGTTTCTCGGATATCCCTCCTTAATTGAGAG 8053 | ||||| || ||| | || ||||| || || | Sbjct 30798 GAACAATCCTGTTTTCACAGTCATGGGACAATTTTTAGGGTATCCTAATTTGATCTCTCG 30739 Query 8054 AACTCATGAATTCTTTGAAAAAAGCTGGATTTATTATAAGGACAGAGCAGAT-TGTTTAG 8112 ||| ||||||||||| || || | |||||||| || | ||| | ||| | | | Sbjct 30738 AACCCATGAATTCTTCCAATCGAGTTTAATTTATTACAACAATAGACCTGATCTAATGAC 30679 Query 8113 A---AGTGAAGGGTG-ATAGAATTTA---CTCCACTGAAGGGCAATTCTGTTGGAATGGA 8165 | | |||| | ||||| | || ||||| | | || |||||||| Sbjct 30678 AGTTATAGAAGCTCGTTTAGAAAACAAAGACCCTATGAAGAG--GGTTTGCTGGAATGGT 30621 Query 8166 CAACTAGGAGGATTGGAAGGTCTCCGACAAAAAGGTTGGAGTATTTTAAATTTGTTAGTC 8225 ||| ||||||| | || || || |||||||||| || ||||| | ||| || | Sbjct 30620 CAAGCAGGAGGACTAGAGGGGCTGAGACAAAAAGGATGAAGTATCGTTTATT--ATAAAC 30563 Query 8226 ATAAATAGAGAGAGCAAGATACGAAATACCATGGTGAAGTGT-TTGGCCCAAGGAGATAA 8284 || || ||||| | || | |||||| | | ||| | ||||| ||||||||||| Sbjct 30562 ATTAAAAGAGAAGGTAAAGTTGAAAATACGA-GACTTAGTATCTTGGCGCAAGGAGATAA 30504 Query 8285 TCAAGTGATATTTACATCATATAAGATTGAACAATATA----GAACCAATGAAGAAAGAA 8340 |||||| | | ||| |||||| | || | || ||| || ||||||| | Sbjct 30503 TCAAGTTGTCTGTACTCAATATAA-ACTGCAGAAGATACGATCAAGCAATGAACTAGATG 30445 Query 8341 ATTTTAACATAAGAGCCATAGTCCAGAATAACAATGAGATAATAGATAGTATTTCTAATG 8400 | | || | |||| ||| || || |||||| | ||||| || || || | Sbjct 30444 AATGTATCCAAAGAATTATA-TC--AAACAACAATAAAATAATGAGTAACATAGAAAAAG 30388 Query 8401 GGACAAAGAAGTTAGGATTGTTGATTAATCATGATGAAACCATACAGAGCGCGGATTACA 8460 | || || | |||||||| |||||||| ||||||||||| || |||||||| Sbjct 30387 GAACTAATCGACTCGGATTGTTAATTAATCAAGATGAAACCATGAAGTCAGCGGATTATT 30328 Query 8461 TGATTTATGGGAAAGTTCCTGTTTTTAGAGGTGTATTCCAAAGTCTCGAAACAAAGAGGT 8520 ||| ||||||||| ||||| ||||| | || | | || | | ||| |||| || | Sbjct 30327 TGAATTATGGGAAGGTTCCGATTTTTCGTGGGAAAGTAAAAGGGATGGAATCAAAAAGAT 30268 Query 8521 GGTCCAGAGTCACATGTGTTACAAACGATCAACTACCAAC 8560 ||||| |||| ||||| | | ||||||||| |||| || Sbjct 30267 GGTCC-GAGTAGCATGTATGTCTAACGATCAATTACCTAC 30229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40444677752960