Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22]
7,301 sequences; 406,468,287 total letters
Query= NC_024473.1
Length=11123
Score E
Sequences producing significant alignments: (Bits) Value
seq1802 250 2e-62
>seq1802
Length=132586
Score = 250 bits (276), Expect = 2e-62
Identities = 901/1388 (65%), Gaps = 41/1388 (3%)
Strand=Plus/Minus
Query 5678 TCTTAGTGGTTTACGGATCATTCCGTCATTGGGGTCATCCATTCATTGATTATTTTGAGG 5737
|||| || |||||||||||||| | |||||||| ||||| || |||| ||| | | |
Sbjct 31603 TCTT-GTTGTTTACGGATCATTTAGACATTGGGGGCATCCGTTTCTTGACTATCTACAAG 31545
Query 5738 GGTTGGAAAAATTGCA----CACTCAGGTGAATATGGAAAAGCATATTGA-CAAGGAGTA 5792
| | |||| || || || || | | | ||||| || ||| | | || ||
Sbjct 31544 GACTCAAAAAGTTACATGAACAAACAACTTTAAA--GAAAACGAT--TGATCGAAGA-TA 31490
Query 5793 CCCACAGCAATTAGCCAGTGATTTGGC-CAGACTTGTGTTAAATAAACAATTTAGCGAGT 5851
| ||| |||||| ||||| || || || | ||||||| || || ||||| |||
Sbjct 31489 TGCGCAGGCATTAGCAAGTGACTTAGCACATA-TTGTGTTGAAGAATCAATT---CGA-- 31436
Query 5852 CaaaaaaaTGGTTCGTGGACCCTTCAAA--AATGTCTCCCAAA-----CACCCTTTTTAT 5904
|||||| | | || ||| | || ||| ||| | | | || |||||| | |||
Sbjct 31435 CAAAAAGAAGATT--TGGTCAGTTGAAACCAATCTATTGCGAAAAGATCACCCTCTATAT 31378
Query 5905 GAACATGTCATTAATAAGACATGGCCCACAGCAGCCAAAATTCAAGACTTTGGTGACAAT 5964
|| | | | | || |||||||| || || | || ||||||||| || |
Sbjct 31377 GACTCAATTACTCAAAATACATGGCCTACTCCATTTCAGATCAGAGACTTTGGGGATCAA 31318
Query 5965 TGGCACAAGCTTCCATTAATTCAATGTTTTGAAATACCTGATTTAATAGACCCATCGGTG 6024
||||| | ||||| || | | |||||||| || || ||| | || || || |
Sbjct 31317 TGGCATACTCTTCCTTTGAAAAAGTGTTTTGAGATCCCCGATGTGATCGATCCTAGTTTA 31258
Query 6025 ATTTATTCAGACAAAAGTCATTCCATGAACAAAAAGGAGGTAATACAGCATGTTCGGTCA 6084
|| ||| | || ||||| ||||| || | || | | || ||||||| | |
Sbjct 31257 ATCTATGCTGATAAAAGCCATTCAATCACTTAATCAGCAATTCTAGAGCATGTAAGAAAA 31198
Query 6085 AAGCCGAATGTTCCAATCCCAAGCAGGAAAGTTCTGCAAACAATGCTTACCAATAGGGCA 6144
| |||||| |||| ||||| | ||| || || | || | | | || | |||
Sbjct 31197 TATCCGAATATTCCGATCCCGTCAAAGAAGGTACTAGAGACTTTTATCAACAGTCCCGCA 31138
Query 6145 ACAAACTGGAAAGCCTTTCTGAAAGATATCGACGAAAATGGAATGGATGATGACGATTTG 6204
||| | |||||| ||||| ||||||| || | || |||| | || || || |
Sbjct 31137 ACAGAATGGAAAACCTTTTTGAAAGAGGTCAATGATCATGGTTTAGACCCGGAATATCTT 31078
Query 6205 ATAATTGGATTAAAGGGAAAAGAAAGAGAATTGAAAATAGCTGGGAGATTCTTCTCATTG 6264
| || |||||| ||| || || || || | |||| | || ||||| || | |
Sbjct 31077 GTTATCGGATTACGGGGGAAGGAGCGAAAAATTAAAAGAATAGGTAGATTTTTTGCTCTT 31018
Query 6265 ATGTCATGGAGATTAAGGGAATATTTTGTGATCACGGAGTACTTAATCAAAACATACTAC 6324
||||| |||| |||||| || ||||| || || || | || || || ||| | |
Sbjct 31017 ATGTCCTGGAAATTAAGAGATTATTTCGTAATAAC--AATATTTGATTAAAGTGCATTTT 30960
Query 6325 GTTCCCTTGTTTAAGGGGTTAACTATGGCAGATGACCTCACATCGGTGATTAAGAAGATG 6384
|| || |||||| ||| || ||||||||||||||||| | | || | |||||||||
Sbjct 30959 GTGCCATTGTTTTCGGGATTGACTATGGCAGATGACCTTAATACTGTATTAAAGAAGATG 30900
Query 6385 ATGGACAGTTCATCAGGTCAAGGGCTCGATGATTATTCATCAGTTTGTTTGGCTAACCAT 6444
| || | ||| ||||||||| | |||| ||| || | | ||||| |||
Sbjct 30899 TTAGATACTTCGAATGGTCAAGGGTTAGATGGATATGAATATATAACAATTGCTAATCAT 30840
Query 6445 ATTGACTACGAGAAGTGGAATAACCATCAAAGAAAGGAATCTAATGGTCCCATCTTCAGA 6504
||| | || || |||||||| || ||||||||| | ||| | || ||| | |||| |
Sbjct 30839 ATTAATTATGAAAAGTGGAACAATCATCAAAGAGATGAAGCGAACAATCCTGTTTTCACA 30780
Query 6505 GTCATGGGACAGTTTCTGGGTTATCCATCACTCATAGAGAGAACTCATGAATTTTTTGAG 6564
||||||||||| ||| | || ||||| | || |||| |||||||| || |
Sbjct 30779 GTCATGGGACAATTTTTAGGGTATCCTAATTTGATCTCTCGAACCCATGAATTCTTCCAA 30720
Query 6565 AAAAGCTTAATTTATTACAATGGGCGTCCTGATCTAATGACCGTTCGAAATGGCACATTG 6624
|| |||||||||||||| | |||||||||||||| ||| | | || | ||
Sbjct 30719 TCGAGTTTAATTTATTACAACAATAGACCTGATCTAATGACAGTTATAGA-AGCTCGTTT 30661
Query 6625 TG----TAATTCCACTAAGCACCGGGTTTGTTGGAATGGGCAAAAAGGAGGTTTGGAAGG 6680
| || | ||| | | ||||||| |||||||| ||| |||||| | || ||
Sbjct 30660 AGAAAACAAAGACCCTATGAAGAGGGTTTGCTGGAATGGTCAAGCAGGAGGACTAGAGGG 30601
Query 6681 ACTAAGACAAAAGGGATGGAGTATTGTGAATCTCTTGGTTATTCAAAGGGAAGCCAAAAT 6740
|| |||||||| ||||| ||||| || | | | ||| |||| |||| ||| |
Sbjct 30600 GCTGAGACAAAAAGGATGAAGTATCGT--TTATTATAAACATTAAAAGAGAAGGTAAAGT 30543
Query 6741 TCGAAACACAGCAGTGAAGGTCTTAGCACAGGGAGATAATCAGGTTATATGCACTCAATA 6800
| ||| || | | | |||| || || ||||||||||| ||| | || ||||||||
Sbjct 30542 TGAAAATACGAGACTTAGTATCTTGGCGCAAGGAGATAATCAAGTTGTCTGTACTCAATA 30483
Query 6801 CAAGACAAAGAAAACCAGATC-AGAATTGGAATTAAGAGCAGTCT-TACATCAGATGGCA 6858
|| |||| | |||| || | || | | ||| | | | | || || |
Sbjct 30482 TAAACTGCAGAAGATACGATCAAGCAATGAACT--AGATGAATGTATCCAAAGAATTATA 30425
Query 6859 GGAAACAATAATAAAATCATGGAAGAAATTAAGAGAGGGACAGAGAAGTTGGGCCTAATC 6918
|||||| |||||||| ||| | || | | ||| || | | || | |
Sbjct 30424 TCAAACAACAATAAAATAATGAGTAACATAGAAAAAGGAACTAATCGACTCGGATTGTTA 30365
Query 6919 ATAAATGATGATGAGACTATGCAATCAGCAGACTATTTAAATTACGGGAAAATTCCAATT 6978
|| ||| | ||||| || ||| | ||||| || ||||| ||||| ||||| |||| |||
Sbjct 30364 ATTAATCAAGATGAAACCATGAAGTCAGCGGATTATTTGAATTATGGGAAGGTTCCGATT 30305
Query 6979 TTCCGGGGAGTCATAAGAGGACTAGAAACAAAGAGATGGTCACGGGTAACATGTGTCACT 7038
|| || || ||| ||| | ||| |||| |||||||| || ||| ||||| | ||
Sbjct 30304 TTTCGTGGGAAAGTAAAAGGGATGGAATCAAAAAGATGGTC-CGAGTAGCATGTATGTCT 30246
Query 7039 AATGATCA 7046
|| |||||
Sbjct 30245 AACGATCA 30238
Score = 86.0 bits (94), Expect = 4e-13
Identities = 80/102 (78%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 7267 TTATATCTAGATCCTTCAATCGGAGGAGTATGTGGTATGGCATTATCTCGGTTTTTAATC 7326
|||||| ||||||| || | || || | || || ||| || || |||| |||||||||
Sbjct 30011 TTATATTTAGATCCCTCTTTGGGCGGCATCTGCGGAATGTCACTAACTCGTTTTTTAATC 29952
Query 7327 AGAGCATTTCCTGATCCGGTGACAGAGAGTCTCTCATTCTGG 7368
||||||||||||||||| || || || ||| | ||||| |||
Sbjct 29951 AGAGCATTTCCTGATCCTGTAACTGAAAGTTTATCATTTTGG 29910
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 35475485937268
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |