Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_024473.1 Length=11123 Score E Sequences producing significant alignments: (Bits) Value seq1802 250 2e-62 >seq1802 Length=132586 Score = 250 bits (276), Expect = 2e-62 Identities = 901/1388 (65%), Gaps = 41/1388 (3%) Strand=Plus/Minus Query 5678 TCTTAGTGGTTTACGGATCATTCCGTCATTGGGGTCATCCATTCATTGATTATTTTGAGG 5737 |||| || |||||||||||||| | |||||||| ||||| || |||| ||| | | | Sbjct 31603 TCTT-GTTGTTTACGGATCATTTAGACATTGGGGGCATCCGTTTCTTGACTATCTACAAG 31545 Query 5738 GGTTGGAAAAATTGCA----CACTCAGGTGAATATGGAAAAGCATATTGA-CAAGGAGTA 5792 | | |||| || || || || | | | ||||| || ||| | | || || Sbjct 31544 GACTCAAAAAGTTACATGAACAAACAACTTTAAA--GAAAACGAT--TGATCGAAGA-TA 31490 Query 5793 CCCACAGCAATTAGCCAGTGATTTGGC-CAGACTTGTGTTAAATAAACAATTTAGCGAGT 5851 | ||| |||||| ||||| || || || | ||||||| || || ||||| ||| Sbjct 31489 TGCGCAGGCATTAGCAAGTGACTTAGCACATA-TTGTGTTGAAGAATCAATT---CGA-- 31436 Query 5852 CaaaaaaaTGGTTCGTGGACCCTTCAAA--AATGTCTCCCAAA-----CACCCTTTTTAT 5904 |||||| | | || ||| | || ||| ||| | | | || |||||| | ||| Sbjct 31435 CAAAAAGAAGATT--TGGTCAGTTGAAACCAATCTATTGCGAAAAGATCACCCTCTATAT 31378 Query 5905 GAACATGTCATTAATAAGACATGGCCCACAGCAGCCAAAATTCAAGACTTTGGTGACAAT 5964 || | | | | || |||||||| || || | || ||||||||| || | Sbjct 31377 GACTCAATTACTCAAAATACATGGCCTACTCCATTTCAGATCAGAGACTTTGGGGATCAA 31318 Query 5965 TGGCACAAGCTTCCATTAATTCAATGTTTTGAAATACCTGATTTAATAGACCCATCGGTG 6024 ||||| | ||||| || | | |||||||| || || ||| | || || || | Sbjct 31317 TGGCATACTCTTCCTTTGAAAAAGTGTTTTGAGATCCCCGATGTGATCGATCCTAGTTTA 31258 Query 6025 ATTTATTCAGACAAAAGTCATTCCATGAACAAAAAGGAGGTAATACAGCATGTTCGGTCA 6084 || ||| | || ||||| ||||| || | || | | || ||||||| | | Sbjct 31257 ATCTATGCTGATAAAAGCCATTCAATCACTTAATCAGCAATTCTAGAGCATGTAAGAAAA 31198 Query 6085 AAGCCGAATGTTCCAATCCCAAGCAGGAAAGTTCTGCAAACAATGCTTACCAATAGGGCA 6144 | |||||| |||| ||||| | ||| || || | || | | | || | ||| Sbjct 31197 TATCCGAATATTCCGATCCCGTCAAAGAAGGTACTAGAGACTTTTATCAACAGTCCCGCA 31138 Query 6145 ACAAACTGGAAAGCCTTTCTGAAAGATATCGACGAAAATGGAATGGATGATGACGATTTG 6204 ||| | |||||| ||||| ||||||| || | || |||| | || || || | Sbjct 31137 ACAGAATGGAAAACCTTTTTGAAAGAGGTCAATGATCATGGTTTAGACCCGGAATATCTT 31078 Query 6205 ATAATTGGATTAAAGGGAAAAGAAAGAGAATTGAAAATAGCTGGGAGATTCTTCTCATTG 6264 | || |||||| ||| || || || || | |||| | || ||||| || | | Sbjct 31077 GTTATCGGATTACGGGGGAAGGAGCGAAAAATTAAAAGAATAGGTAGATTTTTTGCTCTT 31018 Query 6265 ATGTCATGGAGATTAAGGGAATATTTTGTGATCACGGAGTACTTAATCAAAACATACTAC 6324 ||||| |||| |||||| || ||||| || || || | || || || ||| | | Sbjct 31017 ATGTCCTGGAAATTAAGAGATTATTTCGTAATAAC--AATATTTGATTAAAGTGCATTTT 30960 Query 6325 GTTCCCTTGTTTAAGGGGTTAACTATGGCAGATGACCTCACATCGGTGATTAAGAAGATG 6384 || || |||||| ||| || ||||||||||||||||| | | || | ||||||||| Sbjct 30959 GTGCCATTGTTTTCGGGATTGACTATGGCAGATGACCTTAATACTGTATTAAAGAAGATG 30900 Query 6385 ATGGACAGTTCATCAGGTCAAGGGCTCGATGATTATTCATCAGTTTGTTTGGCTAACCAT 6444 | || | ||| ||||||||| | |||| ||| || | | ||||| ||| Sbjct 30899 TTAGATACTTCGAATGGTCAAGGGTTAGATGGATATGAATATATAACAATTGCTAATCAT 30840 Query 6445 ATTGACTACGAGAAGTGGAATAACCATCAAAGAAAGGAATCTAATGGTCCCATCTTCAGA 6504 ||| | || || |||||||| || ||||||||| | ||| | || ||| | |||| | Sbjct 30839 ATTAATTATGAAAAGTGGAACAATCATCAAAGAGATGAAGCGAACAATCCTGTTTTCACA 30780 Query 6505 GTCATGGGACAGTTTCTGGGTTATCCATCACTCATAGAGAGAACTCATGAATTTTTTGAG 6564 ||||||||||| ||| | || ||||| | || |||| |||||||| || | Sbjct 30779 GTCATGGGACAATTTTTAGGGTATCCTAATTTGATCTCTCGAACCCATGAATTCTTCCAA 30720 Query 6565 AAAAGCTTAATTTATTACAATGGGCGTCCTGATCTAATGACCGTTCGAAATGGCACATTG 6624 || |||||||||||||| | |||||||||||||| ||| | | || | || Sbjct 30719 TCGAGTTTAATTTATTACAACAATAGACCTGATCTAATGACAGTTATAGA-AGCTCGTTT 30661 Query 6625 TG----TAATTCCACTAAGCACCGGGTTTGTTGGAATGGGCAAAAAGGAGGTTTGGAAGG 6680 | || | ||| | | ||||||| |||||||| ||| |||||| | || || Sbjct 30660 AGAAAACAAAGACCCTATGAAGAGGGTTTGCTGGAATGGTCAAGCAGGAGGACTAGAGGG 30601 Query 6681 ACTAAGACAAAAGGGATGGAGTATTGTGAATCTCTTGGTTATTCAAAGGGAAGCCAAAAT 6740 || |||||||| ||||| ||||| || | | | ||| |||| |||| ||| | Sbjct 30600 GCTGAGACAAAAAGGATGAAGTATCGT--TTATTATAAACATTAAAAGAGAAGGTAAAGT 30543 Query 6741 TCGAAACACAGCAGTGAAGGTCTTAGCACAGGGAGATAATCAGGTTATATGCACTCAATA 6800 | ||| || | | | |||| || || ||||||||||| ||| | || |||||||| Sbjct 30542 TGAAAATACGAGACTTAGTATCTTGGCGCAAGGAGATAATCAAGTTGTCTGTACTCAATA 30483 Query 6801 CAAGACAAAGAAAACCAGATC-AGAATTGGAATTAAGAGCAGTCT-TACATCAGATGGCA 6858 || |||| | |||| || | || | | ||| | | | | || || | Sbjct 30482 TAAACTGCAGAAGATACGATCAAGCAATGAACT--AGATGAATGTATCCAAAGAATTATA 30425 Query 6859 GGAAACAATAATAAAATCATGGAAGAAATTAAGAGAGGGACAGAGAAGTTGGGCCTAATC 6918 |||||| |||||||| ||| | || | | ||| || | | || | | Sbjct 30424 TCAAACAACAATAAAATAATGAGTAACATAGAAAAAGGAACTAATCGACTCGGATTGTTA 30365 Query 6919 ATAAATGATGATGAGACTATGCAATCAGCAGACTATTTAAATTACGGGAAAATTCCAATT 6978 || ||| | ||||| || ||| | ||||| || ||||| ||||| ||||| |||| ||| Sbjct 30364 ATTAATCAAGATGAAACCATGAAGTCAGCGGATTATTTGAATTATGGGAAGGTTCCGATT 30305 Query 6979 TTCCGGGGAGTCATAAGAGGACTAGAAACAAAGAGATGGTCACGGGTAACATGTGTCACT 7038 || || || ||| ||| | ||| |||| |||||||| || ||| ||||| | || Sbjct 30304 TTTCGTGGGAAAGTAAAAGGGATGGAATCAAAAAGATGGTC-CGAGTAGCATGTATGTCT 30246 Query 7039 AATGATCA 7046 || ||||| Sbjct 30245 AACGATCA 30238 Score = 86.0 bits (94), Expect = 4e-13 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 7267 TTATATCTAGATCCTTCAATCGGAGGAGTATGTGGTATGGCATTATCTCGGTTTTTAATC 7326 |||||| ||||||| || | || || | || || ||| || || |||| ||||||||| Sbjct 30011 TTATATTTAGATCCCTCTTTGGGCGGCATCTGCGGAATGTCACTAACTCGTTTTTTAATC 29952 Query 7327 AGAGCATTTCCTGATCCGGTGACAGAGAGTCTCTCATTCTGG 7368 ||||||||||||||||| || || || ||| | ||||| ||| Sbjct 29951 AGAGCATTTCCTGATCCTGTAACTGAAAGTTTATCATTTTGG 29910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35475485937268