Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_025255.1 Length=11135 Score E Sequences producing significant alignments: (Bits) Value seq1802 219 3e-53 >seq1802 Length=132586 Score = 219 bits (242), Expect = 3e-53 Identities = 601/914 (66%), Gaps = 20/914 (2%) Strand=Plus/Minus Query 6204 GCAACAGACTGGAAAGAGTTTTTAAAGAAAATTGACGAAGAGGGGTTAGAGGATGATGAT 6263 |||||||| |||||| ||||| || | | | || | || ||||| || || Sbjct 31140 GCAACAGAATGGAAAACCTTTTTGAAAGAGGTCAATGATCATGGTTTAGACCCGGAATAT 31081 Query 6264 CTTGTCATAGGACTCAAAGGGAAAGAGAGAGAATTAAAAATTGCGGGAAGATTCTTTTCT 6323 ||||| || ||| | ||||| ||| || || | |||| || ||||| ||| || Sbjct 31080 CTTGTTATCGGATTACGGGGGAAGGAGCGAAAAATTAAAAGAATAGGTAGATTTTTTGCT 31021 Query 6324 TTGATGTCCTGGAAGCTCAGAGAGTATTTTGTCATCACTGAGTATTTGATTAAGACGCAC 6383 | ||||||||||| | ||||| ||||| || || || | ||||||||||| ||| Sbjct 31020 CTTATGTCCTGGAAATTAAGAGATTATTTCGTAATAAC--AATATTTGATTAAAGTGCAT 30963 Query 6384 TTTGTCCCGATGTTTAAAGGGTTGACCATGGCGGATGACTTGACAGCGGTGATAAAGAAG 6443 ||||| || ||||| || ||||| ||||| |||||| | | | || |||||||| Sbjct 30962 TTTGTGCCATTGTTTTCGGGATTGACTATGGCAGATGACCTTAATACTGTATTAAAGAAG 30903 Query 6444 ATGATGGACACATCTTCAGGACAAGGCTTAGATAATTATGAATCCATTTGTATAGCCAAC 6503 ||| | || || || || ||||| |||||| ||||||| || || || || Sbjct 30902 ATGTTAGATACTTCGAATGGTCAAGGGTTAGATGGATATGAATATATAACAATTGCTAAT 30843 Query 6504 CATATTGACTATGAGAAGTGGAACAATCATCAAAGAAAAGAGTCGAACGGGCCCGTGTTC 6563 |||||| | ||||| ||||||||||||||||||||| | || ||||| || || ||| Sbjct 30842 CATATTAATTATGAAAAGTGGAACAATCATCAAAGAGATGAAGCGAACAATCCTGTTTTC 30783 Query 6564 AAGGTGATGGGTCAATTCTTGGGATATCCACGTCTGATTGAGAGAACTCATGAATTTTTT 6623 | || ||||| ||||| || || ||||| | |||| |||| |||||||| || Sbjct 30782 ACAGTCATGGGACAATTTTTAGGGTATCCTAATTTGATCTCTCGAACCCATGAATTCTTC 30723 Query 6624 GAGAAGAGTCTGATATATTACAATGGACGACCAGATCTGATGCGGGTTCGAGGAAATTCT 6683 | |||| | || |||||||| |||| ||||| ||| ||| || | | | Sbjct 30722 CAATCGAGTTTAATTTATTACAACAATAGACCTGATCTAATGACAGTTATAGAAGCTCGT 30663 Query 6684 CTAGTCAACGCCTCATCTTTAAA---TGTCTGCTGGGAGGGTCAAGCTGGGGGATTAGAA 6740 ||| ||| || | || || |||||| | |||||||| || ||| |||| Sbjct 30662 TTAGAAAACAAAGACCCTATGAAGAGGGTTTGCTGGAATGGTCAAGCAGGAGGACTAGAG 30603 Query 6741 GGACTGCGACAGAAGGGATGGAGTATTCTAAATTTGCTTGTCATTCAGAGAGAAGCAAAA 6800 || ||| |||| || ||||| ||||| | ||| | |||| | ||||||| ||| Sbjct 30602 GGGCTGAGACAAAAAGGATGAAGTATCGTTTATT--ATAAACATTAAAAGAGAAGGTAAA 30545 Query 6801 ATAAGGAACACCGCCGTGAAAGTGCTAGCTCAAGGTGACAATCAGGTGATATGTACTCAG 6860 | || || | | | | || ||||| || ||||| || | |||||||| Sbjct 30544 GTTGAAAATACGAGACTTAGTATCTTGGCGCAAGGAGATAATCAAGTTGTCTGTACTCAA 30485 Query 6861 TATAAAACGAAGAA------ATCCCGGAATGATATTGAGCTTAAGGCAGCTCTAACACAG 6914 |||||| | |||| ||| | ||||| | || | || | | | | || | Sbjct 30484 TATAAACTGCAGAAGATACGATCAAGCAATGAACT--AGATGAATGTATC-CAAAGA--- 30431 Query 6915 ATGGTATCTAATAATGAGATGATTATGTCTGCGATTAAATCAGGCACCGAGAAACTGGGT 6974 || |||| || || | | || ||| | || || ||| || | ||| || Sbjct 30430 ATTATATCAAACAACAATAAAATAATGAGTAACATAGAAAAAGGAACTAATCGACTCGGA 30371 Query 6975 CTTTTGATTAATGATGATGAGACAATGCAATCTGCTGATTACCTCAATTACGGGAAGGTT 7034 | || |||||| | ||||| || ||| | || || ||||| | ||||| ||||||||| Sbjct 30370 TTGTTAATTAATCAAGATGAAACCATGAAGTCAGCGGATTATTTGAATTATGGGAAGGTT 30311 Query 7035 CCCATTTTCAGAGGAGTAATCAGAGGCCTTGAGACAAAAAGATGGTCACGCGTGACCTGT 7094 || ||||| | || | | | ||| | || ||||||||||||| || || | ||| Sbjct 30310 CCGATTTTTCGTGGGAAAGTAAAAGGGATGGAATCAAAAAGATGGTC-CGAGTAGCATGT 30252 Query 7095 GTGACAAATGATCA 7108 || | || ||||| Sbjct 30251 ATGTCTAACGATCA 30238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35513882783236