Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_025341.1 Length=11139 Score E Sequences producing significant alignments: (Bits) Value seq1802 197 1e-46 >seq1802 Length=132586 Score = 197 bits (218), Expect = 1e-46 Identities = 414/610 (68%), Gaps = 23/610 (4%) Strand=Plus/Minus Query 6270 ATCGGATTGAAAGGGAAAGAGAGAGAAGTGAAAGTAAAAGGACGGTTCTTTTCACTCATG 6329 |||||||| ||||| ||| || || | ||| || ||| | || ||| | || ||| Sbjct 31074 ATCGGATTACGGGGGAAGGAGCGAAAAATTAAAAGAATAGGTAGATTTTTTGCTCTTATG 31015 Query 6330 TCGTGGAAACTAAGAGAATATTTTGTTGTCACAGAATACCTAATCAAAGAACATTTCGTC 6389 || |||||| ||||||| ||||| || | ||| ||| | || |||| ||||| || Sbjct 31014 TCCTGGAAATTAAGAGATTATTTCGTAATAACA--ATATTTGATTAAAGTGCATTTTGTG 30957 Query 6390 CCTCTCTTCAATGGATTGACTATGGCGGATGACATGACCACCGTAATATCAAAACTAATG 6449 || | || |||||||||||||| |||||| | | || ||| || || | | Sbjct 30956 CCATTGTTTTCGGGATTGACTATGGCAGATGACCTTAATACTGTATTAAAGAAGATGTTA 30897 Query 6450 GATCGCACTCAGGGCCAAGGAGGAGAGGACTACACCCAAGTTTGCATTGCTAATCATATC 6509 ||| | | || ||||| ||| | || | | |||||||||||||| Sbjct 30896 GATACTTCGAATGGTCAAGGGTTAGATGGATATGAATATATAACAATTGCTAATCATATT 30837 Query 6510 GATTATGAAAAGTGGAACAATCATCAGAGA----AAGCGTGCAACCGGACCTGTGTTCAT 6565 ||||||||||||||||||||||||| ||| ||||| ||| | |||| |||| Sbjct 30836 AATTATGAAAAGTGGAACAATCATCAAAGAGATGAAGCGAACAATC----CTGTTTTCAC 30781 Query 6566 AGTCATGGGACAATTCCTTGGATTTCCTAAACTGATCTATAGAACACATGAGTTCTTTGA 6625 ||||||||||||||| | || | |||||| |||||| | |||| ||||| ||||| | Sbjct 30780 AGTCATGGGACAATTTTTAGGGTATCCTAATTTGATCTCTCGAACCCATGAATTCTTCCA 30721 Query 6626 ATCTAGCTGGGTGTATTACAATGCTAGACCTGATTTAATG---GTCATCCGAGATGGGAG 6682 ||| || | | |||||||| |||||||||| ||||| || || ||| | | Sbjct 30720 ATCGAGTTTAATTTATTACAACAATAGACCTGATCTAATGACAGTTAT---AGAAGCTCG 30664 Query 6683 ATTAGAAAATCTAGGTCC--TGAA-ATAGTTTGTTGGAATGGACAAGATGGGGGGTTAGA 6739 |||||||| || || |||| | ||||| |||||||| |||| || || |||| Sbjct 30663 TTTAGAAAACAAAGACCCTATGAAGAGGGTTTGCTGGAATGGTCAAGCAGGAGGACTAGA 30604 Query 6740 AGGGCTACGACAGAAAGGATGGACAGTGGTCGGGT-TACTCATGATACGGAGAGAAGCTA 6798 ||||| |||| |||||||| | | || | || ||| | | ||||||| || Sbjct 30603 GGGGCTGAGACAAAAAGGATGAAGTATCGTTTATTATAAACATTAAA---AGAGAAGGTA 30547 Query 6799 GGGTTAGAAACACCGCTGTCAAGATACTGGCTCAGGGAGATAATCAGGTGATTTGTTCTC 6858 ||| ||| || | | || |||| || ||||||||||| || | ||| ||| Sbjct 30546 AAGTTGAAAATACGAGACTTAGTATCTTGGCGCAAGGAGATAATCAAGTTGTCTGTACTC 30487 Query 6859 AATATAAGCT 6868 ||||||| || Sbjct 30486 AATATAAACT 30477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35526681731892