Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_025353.1 Length=11070 Score E Sequences producing significant alignments: (Bits) Value seq1802 370 7e-99 >seq1802 Length=132586 Score = 370 bits (410), Expect = 7e-99 Identities = 931/1400 (67%), Gaps = 30/1400 (2%) Strand=Plus/Minus Query 5705 AGATCTAACTCTAGTTGTTTACGGGTCTTTCAGGCATTGGGGCCATCCCTTCATCGATTA 5764 |||||| ||| ||||||||||| || || || |||||||| ||||| || | || || Sbjct 31612 AGATCTTGTTCTTGTTGTTTACGGATCATTTAGACATTGGGGGCATCCGTTTCTTGACTA 31553 Query 5765 TTATGAAGGTTTGAAGAAGTTACATCATCAAGTAACTATGCCTAAGACTATCGACAAAGG 5824 | |||| | || ||||||||| | ||| |||| | || || || || | | Sbjct 31552 TCTACAAGGACTCAAAAAGTTACATGAACAAACAACTTTAAAGAAAACGATTGATCGAAG 31493 Query 5825 CTATGCGGCGGCGTTAGCAAGTGATCTGGCACGGATTGTTTTGCAGCAACAATTCAGTGA 5884 |||||| ||| ||||||||||| | |||| ||||| ||| || | |||||| | Sbjct 31492 ATATGCGCAGGCATTAGCAAGTGACTTAGCACATATTGTGTTGAAGAATCAATTCGACAA 31433 Query 5885 AAACAAAAAATGGTTTGTGGATA--AATCCGCAATTCCTAAGAAA-CATCCTTTTTATAA 5941 ||| || | |||| || || | |||| ||| | || | | || ||| | ||| | Sbjct 31432 AAAGAAGATTTGGTCAGTTGAAACCAATCT---ATTGCGAAAAGATCACCCTCTATATGA 31376 Query 5942 CCACATCACAGAAAACACTTGGCCTACAGCAGCCCAAATACAAGACTTTGGAGATCACTG 6001 | || || |||| || |||||||| || || || ||||||||| ||||| || Sbjct 31375 CTCAATTACTCAAAATACATGGCCTACTCCATTTCAGATCAGAGACTTTGGGGATCAATG 31316 Query 6002 GCATGAATTACCTTTGACGAAGTGTTTTGAAATCCCTGATCTTATTGATCCATCAATCAT 6061 |||| | ||||||| ||||||||||| ||||| ||| | || ||||| | || Sbjct 31315 GCATACTCTTCCTTTGAAAAAGTGTTTTGAGATCCCCGATGTGATCGATCCTAGTTTAAT 31256 Query 6062 ATATTCAGACAAGAGTCATTCCATGAATAGATCTG-ATGTCTTGAGGCATGTTCGCAATT 6120 ||| | || || || ||||| || | | ||| | | ||| ||| ||||| | || | Sbjct 31255 CTATGCTGATAAAAGCCATTCAATCACTTAATCAGCAATTCTAGAG-CATGTAAGAAAAT 31197 Query 6121 CTCCAAACACTCCCATTCCAAGCAGAAAGGTGTTGCAGACAATGCTTGAAACAAAGGCAA 6180 ||| || | ||| || || | ||||| | |||| | | | | |||| Sbjct 31196 ATCCGAATATTCCGATCCCGTCAAAGAAGGTACTAGAGACTTTTATCAACAGTCCCGCAA 31137 Query 6181 CAAATTGGGGAGAATTTTTGTCA----TCAATAGACAAATATGGCTTAGAACTGGAAGAT 6236 || | ||| | |||||| | ||||| || ||| ||||| | |||| || Sbjct 31136 CAGAATGGAAAACCTTTTTGAAAGAGGTCAATGATCA----TGGTTTAGACCCGGAATAT 31081 Query 6237 TTGGTCATCGGGCTGAAAGGGAAAGAACGAGAATTAAAATTGGCCGGCAGAtttttttCT 6296 | || ||||| | ||||| || ||| || | ||| || ||||||||| || Sbjct 31080 CTTGTTATCGGATTACGGGGGAAGGAGCGAAAAATTAAAAGAATAGGTAGATTTTTTGCT 31021 Query 6297 CTTATGTCCTGGAAGTTGAGAGAATATTTCGTCATTACGGAGTATTTAATAAAGACACAT 6356 |||||||||||||| || ||||| |||||||| || || | ||||| || || ||| Sbjct 31020 CTTATGTCCTGGAAATTAAGAGATTATTTCGTAATAAC--AATATTTGATTAAAGTGCAT 30963 Query 6357 TTTGTCCCCATGTTTAAGGGATTGACAATGGCAGATGATCTAACAGCTGTCATAAAGAAA 6416 ||||| || ||||| ||||||||| ||||||||||| || | |||| ||||||| Sbjct 30962 TTTGTGCCATTGTTTTCGGGATTGACTATGGCAGATGACCTTAATACTGTATTAAAGAAG 30903 Query 6417 ATGATGGATACCTCATCAGGACAGGGTTTGGATAATTACGACTCAATTTGCATAGCCAAT 6476 ||| | ||||| || || || || || ||| || || | || || || ||| Sbjct 30902 ATGTTAGATACTTCGAATGGTCAAGGGTTAGATGGATATGAATATATAACAATTGCTAAT 30843 Query 6477 CACATTGATTATGAGAAGTGGAACAATCACCAGCGGAAAGAATCCAATGGTCCTGTTTTT 6536 || ||| ||||||| |||||||||||||| || | | ||| | || ||||||||| Sbjct 30842 CATATTAATTATGAAAAGTGGAACAATCATCAAAGAGATGAAGCGAACAATCCTGTTTTC 30783 Query 6537 AGGGTAATGGGACAATTCCTTGGCTACCCCAATTTGATTGAACGCACCCATGAATTCTTT 6596 | || ||||||||||| | || || || |||||||| || |||||||||||||| Sbjct 30782 ACAGTCATGGGACAATTTTTAGGGTATCCTAATTTGATCTCTCGAACCCATGAATTCTTC 30723 Query 6597 GAAAAAAGTCTGATTTACTATAATGGACGTCCAGACCTGATGCGAGTAAACGGAAACAC- 6655 || ||| | ||||| || || | || || || ||| ||| | ||| | | Sbjct 30722 CAATCGAGTTTAATTTATTACAACAATAGACCTGATCTAATGACAGT-TATAGAAGCTCG 30664 Query 6656 CTTAGAAAACAGAACACCTCTCAA---CGTTTGTTGGCAAGGTCAAGCTGGAGGCTTAGA 6712 |||||||||| | ||| | || ||||| ||| | |||||||| ||||| |||| Sbjct 30663 TTTAGAAAACAAAGACCCTATGAAGAGGGTTTGCTGGAATGGTCAAGCAGGAGGACTAGA 30604 Query 6713 GGGGCTTAGACAAAAAGGATGGAGCATCCTGAATCTTCTTGTGATTCAAAGAGAAGCAAA 6772 |||||| |||||||||||||| || ||| | | || | ||| ||||||||| || Sbjct 30603 GGGGCTGAGACAAAAAGGATGAAGTATC--GTTTATTATAAACATTAAAAGAGAAGGTAA 30546 Query 6773 GATTCGAAATACAGCGGTCAAGGTGCTAGCTCAGGGAGACAATCAGGTCATTTGCACGCA 6832 || |||||| | | | | || || ||||| ||||| || | || || || Sbjct 30545 AGTTGAAAATACGAGACTTAGTATCTTGGCGCAAGGAGATAATCAAGTTGTCTGTACTCA 30486 Query 6833 ATATAAAACAAAAAAGGCCCGAAATGACGCA--GAACTTCTGGGAGCTCTACAACAAATG 6890 ||||||| | ||| || || | ||| ||||| | | | | ||| ||| Sbjct 30485 ATATAAACTGCAGAAGATACG--ATCAAGCAATGAACTAGATGAATGTATCCAAAGAATT 30428 Query 6891 GTAAGTAATAATGAAAGTATAATGCTTGCCATCAAGCAAGGAACTGAAAAATTAGGTTTA 6950 || || || | | |||||| | ||| | |||||||| | | | || || Sbjct 30427 ATATCAAACAACAATAAAATAATGAGTAACATAGAAAAAGGAACTAATCGACTCGGATTG 30368 Query 6951 CTGATAAATGATGATGAGACAATGCAGTCCGCTGATTACCTCAACTACGGGAAAATTCCA 7010 | || ||| | ||||| || ||| |||| || ||||| | || || ||||| |||| Sbjct 30367 TTAATTAATCAAGATGAAACCATGAAGTCAGCGGATTATTTGAATTATGGGAAGGTTCCG 30308 Query 7011 ATATTCCGTGGTGTTATACGAGGGTTAGAGACAAAAAGATGGTCTCGAGTCACATGTGTT 7070 || || ||||| || |||| | || ||||||||||||| ||||| ||||| | Sbjct 30307 ATTTTTCGTGGGAAAGTAAAAGGGATGGAATCAAAAAGATGGTC-CGAGTAGCATGTATG 30249 Query 7071 ACGAACGATCAAATCCCAAC 7090 | ||||||||| | || || Sbjct 30248 TCTAACGATCAATTACCTAC 30229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35305899867576