Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_025356.1 Length=11097 Score E Sequences producing significant alignments: (Bits) Value seq1802 221 9e-54 >seq1802 Length=132586 Score = 221 bits (244), Expect = 9e-54 Identities = 740/1137 (65%), Gaps = 26/1137 (2%) Strand=Plus/Minus Query 6018 TACTTGGCCAACTGCGGCACAGATTCAAGACTTTGGGGACAGATGGAATCAATTGCCATT 6077 ||| ||||| ||| | ||||| |||||||||||| |||| || | || || Sbjct 31360 TACATGGCCTACTCCATTTCAGATCAGAGACTTTGGGGATCAATGGCATACTCTTCCTTT 31301 Query 6078 GACCAAGTGTTTTGAAATCCCTGATTTATTAGACCCTTCCGTTATTTACTCAGACAAAAG 6137 || ||||||||||| ||||| ||| | | || ||| | || || | || ||||| Sbjct 31300 GAAAAAGTGTTTTGAGATCCCCGATGTGATCGATCCTAGTTTAATCTATGCTGATAAAAG 31241 Query 6138 TCATTCCATGAATAGGAGAGAAGTCTTAGATCACGTCACAGCAGCACCGAACAAGCCCAT 6197 ||||| || | | || | | |||| || || | | | ||||| | || || Sbjct 31240 CCATTCAATCACTTAATCAGCAATTCTAGAGCATGTAAGAAAATATCCGAATATTCCGAT 31181 Query 6198 CCCAAGCAAGAAAGTATTAGAGACCATGCTGAACAATCCTGCCACAGACTGGCCATCTTT 6257 ||| ||||| ||| ||||||| | | |||| ||| || ||||| ||| | | || Sbjct 31180 CCCGTCAAAGAAGGTACTAGAGACTTTTATCAACAGTCCCGCAACAGAATGGAAAACCTT 31121 Query 6258 TCTGAAATCTGTGGATGAAGAAGGATTAC-CCCGTGATAGTCTCATAATAGGACTAAAAG 6316 | ||||| || |||| | || ||| |||| ||| ||| | || ||| || | Sbjct 31120 TTTGAAAGAGGTCAATGATCATGGTTTAGACCCGGAATA-TCTTGTTATCGGATTACGGG 31062 Query 6317 GGAAAGAAAGAGAATTGAAAATCGCCGGAAGATTCTTTTCCCTGATGTCCTGGCAACTGA 6376 |||| || || || | |||| || ||||| ||| | || ||||||||| || | | Sbjct 31061 GGAAGGAGCGAAAAATTAAAAGAATAGGTAGATTTTTTGCTCTTATGTCCTGGAAATTAA 31002 Query 6377 GAGAATATTTTGTCATCACCGAGTACTTAATAAAGACTCATTATGTACCATTATTCAAAG 6436 |||| ||||| || || || | || || || || |||| ||| ||||| || | Sbjct 31001 GAGATTATTTCGTAATAAC--AATATTTGATTAAAGTGCATTTTGTGCCATTGTTTTCGG 30944 Query 6437 GACTCACAATGGCGGATGATCTGACATCAGTTGTAAAGAAGATGTTGGACAACACGAATG 6496 || | || ||||| ||||| || | | || ||||||||||||| || | |||||| Sbjct 30943 GATTGACTATGGCAGATGACCTTAATACTGTATTAAAGAAGATGTTAGATACTTCGAATG 30884 Query 6497 GACAAGGACTGGATGATTATTCATCGATTTGCATCGCCAATCACATCGACTATGAGAAGT 6556 | ||||| | |||| ||| || || || || ||||| || | ||||| |||| Sbjct 30883 GTCAAGGGTTAGATGGATATGAATATATAACAATTGCTAATCATATTAATTATGAAAAGT 30824 Query 6557 GGAATAATCATCAGAGAAAAGAATCCAATGGGCCTGTGTTTCGAGTCATGGGGCAGTTTT 6616 |||| |||||||| ||| | ||| | || ||||| || ||||||||| || |||| Sbjct 30823 GGAACAATCATCAAAGAGATGAAGCGAACAATCCTGTTTTCACAGTCATGGGACAATTTT 30764 Query 6617 TGGGTTATCCCAGATTGTTTGAAAGAACCCATGAGTTTTTTGAATCAAGCCTCATTTACT 6676 | || ||||| | ||| | |||||||||| || || |||| || | ||||| | Sbjct 30763 TAGGGTATCCTAATTTGATCTCTCGAACCCATGAATTCTTCCAATCGAGTTTAATTTATT 30704 Query 6677 ACAACGGCAGACCAGACTTGATGGATGTAAGAGGAGATTCGTT----GATCAATACCACT 6732 ||||| ||||| || | ||| || | || || ||||| | ||| | || Sbjct 30703 ACAACAATAGACCTGATCTAATGACAGTTATAGAAG-CTCGTTTAGAAAACAAAGACCCT 30645 Query 6733 GAAAAGTTGGTGTGTTGGGAGGGTCAGGCGGGAGGATTGGAAGGATTGAGACAAAAAGGA 6792 ||| ||| || ||| | ||||| || |||||| | || || |||||||||||||| Sbjct 30644 ATGAAGAGGGTTTGCTGGAATGGTCAAGCAGGAGGACTAGAGGGGCTGAGACAAAAAGGA 30585 Query 6793 TGGAGTGTGCTGAATCTGTTAGTCATAAACAGGGAATCATCCATAAGAAATACAATCGTG 6852 || ||| | | | | || ||| || || ||| | |||||| | | Sbjct 30584 TGAAGTAT--CGTTTATTATAAACATTAAAAGAGAAGGTAAAGTTGAAAATACGAGACTT 30527 Query 6853 AAAGTACTAGCGCAGGGAGACAATCAGGTCATCTGTACTCAATATAAA--ACAAAAAATT 6910 | | | ||||| ||||| ||||| || ||||||||||||||||| || || || Sbjct 30526 AGTATCTTGGCGCAAGGAGATAATCAAGTTGTCTGTACTCAATATAAACTGCAGAAGAT- 30468 Query 6911 ACAAGAACGAGGAA-GAGCTTAAAATGCTTTTATCTGCCATG--GTAGAT--AACAATCA 6965 | || | || || || || | ||| | |||| | | | || || ||||| | Sbjct 30467 --ACGATCAAGCAATGAACT--AGATGAATGTATC--CAAAGAATTATATCAAACAACAA 30414 Query 6966 GACAATCATGAATAGTATCGTGACAGGGACAGGTAAGTTGGGATTGATCATAAATAATGA 7025 | ||| |||| || || | | ||| || | | |||||| | || ||| | || Sbjct 30413 TAAAATAATGAGTAACATAGAAAAAGGAACTAATCGACTCGGATTGTTAATTAATCAAGA 30354 Query 7026 TGAGACCATGCAATCTGCAGATTACCTTAATTACGGAAAAATGCCAGTCTTCCGAGGAAT 7085 ||| |||||| | || || ||||| | ||||| || || | || | || || || | Sbjct 30353 TGAAACCATGAAGTCAGCGGATTATTTGAATTATGGGAAGGTTCCGATTTTTCGTGGGAA 30294 Query 7086 CCTAAGAGGATTAGAGACTAAAAGATGGTCCAGGGTCACATGCATCACGAATGATCA 7142 ||| ||| | || | |||||||||||| | || |||| || | || ||||| Sbjct 30293 AGTAAAAGGGATGGAATCAAAAAGATGGTCC-GAGTAGCATGTATGTCTAACGATCA 30238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35392292771004