Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_025358.1 Length=15024 Score E Sequences producing significant alignments: (Bits) Value seq1802 203 3e-48 >seq1802 Length=132586 Score = 203 bits (224), Expect = 3e-48 Identities = 422/619 (68%), Gaps = 21/619 (3%) Strand=Plus/Minus Query 10119 AATGATCACGGACTAGATTGGGAAAAATTGGTGATTGGGTTGAAAGCTAAGGAACGAGAA 10178 |||||||| || |||| |||| | | || || || || | ||||| ||| || Sbjct 31107 AATGATCATGGTTTAGACCCGGAATATCTTGTTATCGGATTACGGGGGAAGGAGCGAAAA 31048 Query 10179 CTTAAAGAAGAAGGTAGATTCTTTTCTTTAATGTCTTACGAATTGAGGGATTATTTTGTA 10238 ||||| | ||||||||| ||| || | ||||| | |||| || |||||||| ||| Sbjct 31047 ATTAAAAGAATAGGTAGATTTTTTGCTCTTATGTCCTGGAAATTAAGAGATTATTTCGTA 30988 Query 10239 TCTACTGAATACCTGATCAAGAAATATTTTGTACCCTTATTTGAAGGTCTAACAATGGCT 10298 || |||| |||| || ||||||| || || ||| || | || ||||| Sbjct 30987 ATAAC--AATATTTGATTAAAGTGCATTTTGTGCCATTGTTTTCGGGATTGACTATGGCA 30930 Query 10299 GATGATTTGAATACAGTAATTAAGAAGATGTTGGATGTCTCAAGCGGCCAGGGAACCAGA 10358 ||||| | ||||| ||| | ||||||||||| ||| || | || || || ||| Sbjct 30929 GATGACCTTAATACTGTATTAAAGAAGATGTTAGATACTTCGAATGGTCAAGGGTT-AGA 30871 Query 10359 -GAATATGATTATATAACTATTGCAAACAACATCGATTATGAAAAATGGAATAATTATCA 10417 | |||||| |||||||| ||||| || | || |||||||||| ||||| ||| |||| Sbjct 30870 TGGATATGAATATATAACAATTGCTAATCATATTAATTATGAAAAGTGGAACAATCATCA 30811 Query 10418 AAG-GATAGAGTCTAACGGTCCAGTATTTACTGTCATGGGAAAATTTTTGGGGCTACCTA 10476 ||| ||| || | ||| ||| || || || ||||||||| ||||||| ||| |||| Sbjct 30810 AAGAGATGAAG-CGAACAATCCTGTTTTCACAGTCATGGGACAATTTTTAGGGTATCCTA 30752 Query 10477 ATCTCTTTACAAGAACTCATGAATTCTTCCAAAAAAGCTTGATTTATTATAACCAAAGGC 10536 || | | | |||| ||||||||||||||| || || |||||||| ||| | || | Sbjct 30751 ATTTGATCTCTCGAACCCATGAATTCTTCCAATCGAGTTTAATTTATTACAACAATAGAC 30692 Query 10537 CTGATTTAATGATGGTGAGAGGTAATGAATGTCT---CAACAAA-----TCTGGAGTAAA 10588 ||||| |||||| || | || | | || | |||||| | || || | Sbjct 30691 CTGATCTAATGACAGTTATAG---AAGCTCGTTTAGAAAACAAAGACCCTATGAAG--AG 30637 Query 10589 AGTATGTTGGGAGGGCCAAAAAGGGGGTTTGGAGGGACTAAGACAAAAAGGATGGAGTAT 10648 || || ||| | || ||| ||| || | ||||| || |||||||||||||| ||||| Sbjct 30636 GGTTTGCTGGAATGGTCAAGCAGGAGGACTAGAGGGGCTGAGACAAAAAGGATGAAGTAT 30577 Query 10649 TTTAAATTATTTGATGATTGAAAGAGAGAGCAGGATTCGAAATACAAAGGTCAAAATATT 10708 | |||| | | ||| ||||||| | | || |||||| | | | || || Sbjct 30576 CGTTTATTA--TAAACATTAAAAGAGAAGGTAAAGTTGAAAATACGAGACTTAGTATCTT 30519 Query 10709 GGCACAGGGGGATAATCAA 10727 ||| || || ||||||||| Sbjct 30518 GGCGCAAGGAGATAATCAA 30500 Score = 95.1 bits (104), Expect = 1e-15 Identities = 143/197 (73%), Gaps = 5/197 (3%) Strand=Plus/Minus Query 13534 ATTCAA-ATCCTTTGATATCAGGGTTAAGAGTCAATCAAATTGCGACAGGAGCACATTAC 13592 |||||| |||| | ||||| || |||||| | |||| | | |||||||| ||||| Sbjct 27722 ATTCAAGATCCACTAATATCCGGTTTAAGATTATTTCAATGTCCAACAGGAGCCCATTAT 27663 Query 13593 AAACTACGAACAATTGTGGAGAGATCAAAACTGACATACAGA-GATTTTCTATGTGGAGG 13651 ||| || ||||||| | || |||| ||| | |||| | |||| |||| ||||| Sbjct 27662 AAATTAAGAACAATCATAGAAAGATTAAATAT-ACATTATCATGATTGTCTAGTCGGAGG 27604 Query 13652 AGATGGCTCCGGGGGAATGAC-ATCTTGTCTACTCCGAATTAAACCAGTAAGTAGAGGCA 13710 ||||||||| || || ||||| | | ||| | || |||| || || |||||| || | Sbjct 27603 AGATGGCTCAGGAGGGATGACAAGCATGT-TGCTAAGAATGAATCCTATAAGTAAAGCTA 27545 Query 13711 TATTCAATAGCTTATTA 13727 | |||||||| |||||| Sbjct 27544 TTTTCAATAGTTTATTA 27528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 47954351456781