Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_025364.1 Length=11019 Score E Sequences producing significant alignments: (Bits) Value seq1802 239 3e-59 >seq1802 Length=132586 Score = 239 bits (264), Expect = 3e-59 Identities = 573/853 (67%), Gaps = 24/853 (3%) Strand=Plus/Minus Query 6174 GTCATCGGCTTAAAAGGCAAGGAAAGAGAATTAAAAATAGCAGGTAGATTTTTCTCTCTC 6233 || ||||| ||| || ||||| || || | |||| | |||||||||||| |||| Sbjct 31077 GTTATCGGATTACGGGGGAAGGAGCGAAAAATTAAAAGAATAGGTAGATTTTTTGCTCTT 31018 Query 6234 ATGTCTTGGAAATTGAGGGAATACTTTGTGATCACAGAGTACTTAATTAAGACACATTTT 6293 ||||| |||||||| || || || || || || ||| || || ||||| |||||| Sbjct 31017 ATGTCCTGGAAATTAAGAGATTATTTCGTAATAACAA--TATTTGATTAAAGTGCATTTT 30960 Query 6294 GTGCCTCTATTTCATGGTCTCACCATGGCTGACGACATGACTGCAGTCATCAAAAAGATG 6353 ||||| | ||| || | || ||||| || ||| | | | | || | || |||||| Sbjct 30959 GTGCCATTGTTTTCGGGATTGACTATGGCAGATGACCTTAATACTGTATTAAAGAAGATG 30900 Query 6354 TTGGAAAGCTCATCTGGACAAGGTTTGTTAGATTACTCAGCGG-TATGCC--TGGCCAAC 6410 || || | || ||| ||||| ||||||| | | ||| | | || || Sbjct 30899 TTAGATACTTCGAATGGTCAAGG---GTTAGATGGATATGAATATATAACAATTGCTAAT 30843 Query 6411 CATATAGATTATGAAAAATGGAACAATCACCAGCGAAAATTGTCAAACGGTCCTGTCTTC 6470 ||||| |||||||||| ||||||||||| || || | | ||| |||||| ||| Sbjct 30842 CATATTAATTATGAAAAGTGGAACAATCATCAAAGAGATGAAGCGAACAATCCTGTTTTC 30783 Query 6471 AAGGTCATGGGCCAATTCCTTGGGTTTCCGAATCTAATATACAGAACTCATGAATTTTTT 6530 | |||||||| ||||| | |||| ||| ||| | || | |||| |||||||| || Sbjct 30782 ACAGTCATGGGACAATTTTTAGGGTATCCTAATTTGATCTCTCGAACCCATGAATTCTTC 30723 Query 6531 GAGAAAAGCCTAATATATTACAATGGCAGGCCTGATCTCATGAGAGTCAAAGATGACACT 6590 | || |||| |||||||| || |||||||| |||| ||| | ||| | | Sbjct 30722 CAATCGAGTTTAATTTATTACAACAATAGACCTGATCTAATGACAGTTATAGAAGCTCGT 30663 Query 6591 GTTGAAAATGCAGGCACCACTCA---GGTGTGCTGGAATGGGCAGGCAGGAGGCTTGGAA 6647 | ||||| || | | | | ||| ||||||||||| || |||||||| | || Sbjct 30662 TTAGAAAACAAAGACCCTATGAAGAGGGTTTGCTGGAATGGTCAAGCAGGAGGACTAGAG 30603 Query 6648 GGTCTTCGTCAAAAGGGTTGGAGTATTCTAAATCTATTAGTGATTCAAAGGGAGGCTAAA 6707 || || | ||||| || || ||||| | || || || ||| |||| || | |||| Sbjct 30602 GGGCTGAGACAAAAAGGATGAAGTATCGTTTAT-TA-TAAACATTAAAAGAGAAGGTAAA 30545 Query 6708 ATTCGAAATACTGCAGTGAAAGTATTGGCTCAGGGAGACAATCAAGTCATTTGCACTCAG 6767 || |||||| | | | | ||||| || ||||| |||||||| | || ||||| Sbjct 30544 GTTGAAAATACGAGACTTAGTATCTTGGCGCAAGGAGATAATCAAGTTGTCTGTACTCAA 30485 Query 6768 TATAAGACCAAGCAACACAGGAATGAGGAA-GAGTTAAAGATGGCTTTAAATCAAATGAA 6826 ||||| || || | | || || || || | ||||| | | ||| || ||| Sbjct 30484 TATAA-ACTGCAGAAGATACGATCAAGCAATGAACT--AGATGAATGT--ATCCAAAGAA 30430 Query 6827 ----AGCCAACAATGATGCAATTATGAACGCTATTGAACAGGGAACCAACAAACTTGGAT 6882 | | ||||| || ||| |||| || ||| | ||||| || ||| |||| Sbjct 30429 TTATATCAAACAACAATAAAATAATGAGTAACATAGAAAAAGGAACTAATCGACTCGGAT 30370 Query 6883 TGCTTATCAACCAGGATGAAACAATGCAGTCGGCTGACTATTTAAATTATGGAAAAGTAC 6942 || | || || || |||||||| ||| |||| || || ||||| |||||||| || || | Sbjct 30369 TGTTAATTAATCAAGATGAAACCATGAAGTCAGCGGATTATTTGAATTATGGGAAGGTTC 30310 Query 6943 CAATTTTTAGAGGTGTTATAAGAGGATTAGAAACAAAACGATGGTCTCGGGTAACATGTG 7002 | |||||| | || ||| ||| | ||| ||||| ||||||| || ||| ||||| Sbjct 30309 CGATTTTTCGTGGGAAAGTAAAAGGGATGGAATCAAAAAGATGGTC-CGAGTAGCATGTA 30251 Query 7003 TGACTAACGATCA 7015 || |||||||||| Sbjct 30250 TGTCTAACGATCA 30238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35142713272212