Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_025371.1 Length=11082 Score E Sequences producing significant alignments: (Bits) Value seq1802 201 8e-48 >seq1802 Length=132586 Score = 201 bits (222), Expect = 8e-48 Identities = 675/1030 (66%), Gaps = 33/1030 (3%) Strand=Plus/Minus Query 5774 TATGGATCATTTAGACATTGGGGACATCCATTCATATCCTATTTTGAAGGTCTCAAAAAG 5833 || |||||||||||||||||||| ||||| || | |||| | |||| ||||||||| Sbjct 31593 TACGGATCATTTAGACATTGGGGGCATCCGTTTCTTGACTATCTACAAGGACTCAAAAAG 31534 Query 5834 TTGCATAGTCAAGTTACA-CTTCCAA--AAGTCATCGATCGGGAGTATGCTGCAG-CACT 5889 || ||| ||| ||| ||| || || || ||||| ||||| |||| || | Sbjct 31533 TTACATGAACAA---ACAACTTTAAAGAAAACGATTGATCGAAGATATGC-GCAGGCATT 31478 Query 5890 AGCTAGTGATCTTGCCTATACTGTCTTGCAAAGGAAGTTCTCTGAAGAGAAGAAATGGTA 5949 ||| ||||| | || ||| ||| ||| | | | ||| || |||||| |||| Sbjct 31477 AGCAAGTGACTTAGCACATATTGTGTTGAAGAATCAATTCGACAAAAAGAAGATTTGGTC 31418 Query 5950 TGT-GAATGCAGATGAGTTGCCCGCTAAACACCCCTTGAAGGAA-CACATAG--AAAACG 6005 || ||| || || |||| | ||||| | | || || || |||| Sbjct 31417 AGTTGAAACCA-ATCTATTGCGAAAAGATCACCCTCTATATGACTCAATTACTCAAAAT- 31360 Query 6006 GCACATGGCCGACTGCGGCGCAGATTCAAGATTTCGGAGATCGATGGAATCAATTGCCAC 6065 |||||||| ||| | ||||| ||| || || |||| |||| || | || Sbjct 31359 --ACATGGCCTACTCCATTTCAGATCAGAGACTTTGGGGATCAATGGCATACTCTTCCTT 31302 Query 6066 TGACTAAATGTTTCGAGATCCCTGATTTATTAGATCCTTCAGTT--ATTTACTCAGACAA 6123 ||| || ||||| |||||||| ||| | | |||||| |||| || || | || || Sbjct 31301 TGAAAAAGTGTTTTGAGATCCCCGATGTGATCGATCCT--AGTTTAATCTATGCTGATAA 31244 Query 6124 GAGCCACTCCATGAAC-AGGAGGGAGGTCATTGACCACGTCACAACCACGCCAAATAAAC 6182 ||||| || || | | | | || | || || || | || || |||| | Sbjct 31243 AAGCCATTCAATCACTTAATCAGCAATTC-TAGAGCATGTAAGAAAATATCCGAATATTC 31185 Query 6183 CCATTCCGAGCAAGAAAGTGTTGGAGACAATGTTAAACAACCCTGCGACAGATTGGCCAT 6242 | || ||| ||||| || | ||||| | | |||| || || ||||| ||| | Sbjct 31184 CGATCCCGTCAAAGAAGGTACTAGAGACTTTTATCAACAGTCCCGCAACAGAATGGAAAA 31125 Query 6243 CCTTCCTGAAAGCGGTAGACGAAGAAGGATTACCCCGTGACAGTCTCATCATAGGATTGA 6302 |||| |||||| ||| | || | || ||| || || ||| | || ||||| Sbjct 31124 CCTTTTTGAAAGAGGTCAATGATCATGGTTTAGACCCGGAATATCTTGTTATCGGATTAC 31065 Query 6303 AGGGAAAAGAGAGAGAGTTAAAGATCGCCGGAAGGTTCTTTTCACTGATGTCTTGGCAGT 6362 ||| || ||| || | | || | || || || ||| | || ||||| ||| | | Sbjct 31064 GGGGGAAGGAGCGAAAAATTAAAAGAATAGGTAGATTTTTTGCTCTTATGTCCTGGAAAT 31005 Query 6363 TGAGAGAGTACTTTGTGATAACGGAATATCTGATTAAGACCCATTATGTTCCACTATTTA 6422 | ||||| || || || ||||| ||||| ||||||| |||| ||| ||| | ||| Sbjct 31004 TAAGAGATTATTTCGTAATAAC--AATATTTGATTAAAGTGCATTTTGTGCCATTGTTTT 30947 Query 6423 AAGGATTGACTATGGCAGATGACCTCACATCAGTCGTGAAGAAGATGTTGGACAACACAA 6482 ||||||||||||||||||||||| | | || | ||||||||||| || | | | Sbjct 30946 CGGGATTGACTATGGCAGATGACCTTAATACTGTATTAAAGAAGATGTTAGATACTTCGA 30887 Query 6483 ACGGACAAGGATTAGACGACTATTCATCGATTTGTATAGCGAATCACATTGATTACGAAA 6542 | || ||||| ||||| | ||| || || || || ||||| ||| |||| |||| Sbjct 30886 ATGGTCAAGGGTTAGATGGATATGAATATATAACAATTGCTAATCATATTAATTATGAAA 30827 Query 6543 AATGGAACAATCATCAGAGGAAAGAGTCAAATGGACCGGTCTTTCGC-GTCATGGGACAA 6601 | |||||||||||||| || | || | || || || |||| | |||||||||||| Sbjct 30826 AGTGGAACAATCATCAAAGAGATGAAGCGAACAATCCTGT-TTTCACAGTCATGGGACAA 30768 Query 6602 TTTTTGGGATATCCCCGGCTGTTTGAGAGAACTCACGAGTTCTTTGAATCCAGCCTCATT 6661 ||||| || ||||| || | |||| || || ||||| |||| || | ||| Sbjct 30767 TTTTTAGGGTATCCTAATTTGATCTCTCGAACCCATGAATTCTTCCAATCGAGTTTAATT 30708 Query 6662 TACTACAATGGCAGACCAGATTTGATGGATGTGAGGGGAGATTCTTTGGTCAACA----- 6716 || ||||| ||||| ||| | ||| || | | || | ||| | |||| Sbjct 30707 TATTACAACAATAGACCTGATCTAATGACAGTTATAGAAGCTCGTTTAGAAAACAAAGAC 30648 Query 6717 CCACAGAAAAGCTGGTTTGTTGGGAAGGCCAAGCAGGAGGGCTAGAAGGATTGAGGCAAA 6776 || ||| || |||||| ||| | || ||||||||||| ||||| || |||| |||| Sbjct 30647 CCTATGAAGAG--GGTTTGCTGGAATGGTCAAGCAGGAGGACTAGAGGGGCTGAGACAAA 30590 Query 6777 AAGGATGGAG 6786 ||||||| || Sbjct 30589 AAGGATGAAG 30580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35344296713544