Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_025378.1 Length=11202 Score E Sequences producing significant alignments: (Bits) Value seq1802 174 1e-39 >seq1802 Length=132586 Score = 174 bits (192), Expect = 1e-39 Identities = 887/1396 (64%), Gaps = 36/1396 (3%) Strand=Plus/Minus Query 5807 GTTCTCGCAGTCTACGGGTCTTTCCGACACTGGGGTCATCCCTTCATAGATTACACTGAG 5866 ||||| | || ||||| || || |||| ||||| ||||| || | || || | Sbjct 31605 GTTCTTGTTGTTTACGGATCATTTAGACATTGGGGGCATCCGTTTCTTGACTATCTACAA 31546 Query 5867 GGACTCCGTAAGTTGCATGAACAAGTGAC---AATGCCAAA-AGTCATCGACCATGCGTA 5922 |||||| ||||| ||||||||| || || | || | | ||||| || | Sbjct 31545 GGACTCAAAAAGTTACATGAACAAACAACTTTAAAGAAAACGATTGATCGAAGAT----A 31490 Query 5923 TGCTAACGCTTTAGCAAGCGATCTAGCCCGAATAGTGTTGGAACAGGAGTTCAACAAAAA 5982 ||| | || |||||||| || |||| | || |||||| | | | ||| ||||||| Sbjct 31489 TGCGCAGGCATTAGCAAGTGACTTAGCACATATTGTGTTGAAGAATCAATTCGACAAAAA 31430 Query 5983 GAAGAAATGGTCCGTCAATCCTGCTTCAGTCAGTCTC--AACCATC-CCTTCCGTA---C 6036 ||||| ||||| || | | || || | | || ||| || || || | Sbjct 31429 GAAGATTTGGTCAGTTGAAAC-----CAATCTATTGCGAAAAGATCACCCTCTATATGAC 31375 Query 6037 CCACATACTAGAAAACACTTGGCCTACTCCGGCTCAAATACAAGATTTCGGGGATCACTG 6096 || |||| |||| || ||||||||||| ||| || ||| || |||||||| || Sbjct 31374 TCAATTACTC-AAAATACATGGCCTACTCCATTTCAGATCAGAGACTTTGGGGATCAATG 31316 Query 6097 GCATGAACTTCCTCTAATACAGTGCTTCGACATACCAGATCTGATAGACCCATCCATCAT 6156 |||| |||||| | | | |||| || || || || ||| |||| || || | || Sbjct 31315 GCATACTCTTCCTTTGAAAAAGTGTTTTGAGATCCCCGATGTGATCGATCCTAGTTTAAT 31256 Query 6157 CTACTCCGATAAAAGTCACTCTATGAACCGAGCTGAGGTTCTTAACCACGTAAGAAAGCA 6216 ||| | |||||||| || || || | | | | |||| | || |||||||| | Sbjct 31255 CTATGCTGATAAAAGCCATTCAATCACTTAATCAGCAATTCTAGAGCATGTAAGAAAATA 31196 Query 6217 TCCGAACAAGATCATACCTACCAAGAAAGTGTTGAAAACTATGTTGGAAAAACCAGCAAC 6276 |||||| | || || | ||||| || | | ||| | | | | || ||||| Sbjct 31195 TCCGAATATTCCGATCCCGTCAAAGAAGGTACTAGAGACTTTTATCAACAGTCCCGCAAC 31136 Query 6277 TAACTGGCTGGAGTTTCTAGATGAGATCGACAGAAATGGACTAGGAGAGGACGACCTTGT 6336 | ||| ||| | | ||| || | |||| ||| ||| | ||||| Sbjct 31135 AGAATGGAAAACCTTTTTGAAAGAGGTCAATGATCATGGTTTAGACCCGGAATATCTTGT 31076 Query 6337 GATTGGACTTAAAGGGAAAGAGAGAGAATTAAAATTGATTGGGCGTTTCTTTTCTCTCAT 6396 || ||| | ||||| ||| || || | ||| || || | || ||| |||| || Sbjct 31075 TATCGGATTACGGGGGAAGGAGCGAAAAATTAAAAGAATAGGTAGATTTTTTGCTCTTAT 31016 Query 6397 GTCTTGGAAATTGAGAGAATACTTCGTCATAACCGAGCACCTAATTAAGACTCACTTTGT 6456 ||| |||||||| ||||| || ||||| ||||| | | | ||||| || ||||| Sbjct 31015 GTCCTGGAAATTAAGAGATTATTTCGTAATAAC--AATATTTGATTAAAGTGCATTTTGT 30958 Query 6457 CCCTCTGTTCCACGGACTTACGATGGCAGATGATCTCACATCAGTGATCAAGAAGATGAT 6516 || |||| ||| | || ||||||||||| || | | || | ||||||||| | Sbjct 30957 GCCATTGTTTTCGGGATTGACTATGGCAGATGACCTTAATACTGTATTAAAGAAGATGTT 30898 Query 6517 GGACAGTTCCTCGGGGCAGGGGTT-GACAGATTACTCAGCTGTATGCATAGCCAATCATA 6575 || | ||| || || ||||| || ||| | | | || || || ||||||| Sbjct 30897 AGATACTTCGAATGGTCAAGGGTTAGATGGAT-ATGAATATATAACAATTGCTAATCATA 30839 Query 6576 TCGACTACGAAAAATGGAACAATCACCAGCGGAAAGAATCCAATGGGCCGGTATTCCGAG 6635 | | || ||||| ||||||||||| || | | ||| | || || || ||| || Sbjct 30838 TTAATTATGAAAAGTGGAACAATCATCAAAGAGATGAAGCGAACAATCCTGTTTTCACAG 30779 Query 6636 TAATGGGCCAATTCTTGGGCTTCCCCAATCTGATATCCAGAACGCACGAATTCTTTGAGA 6695 | ||||| ||||| || || | || ||| |||| || |||| || |||||||| | Sbjct 30778 TCATGGGACAATTTTTAGGGTATCCTAATTTGATCTCTCGAACCCATGAATTCTTCCAAT 30719 Query 6696 AAAGTTTGGTTTATTACAATGGCCGGCCAGATTTGATGAGAGTATCGGGGAATTCTTTGA 6755 ||||| |||||||||| | || ||| | |||| ||| | | | || || | Sbjct 30718 CGAGTTTAATTTATTACAACAATAGACCTGATCTAATGACAGT-TATAGAAGCTCGTTTA 30660 Query 6756 CAAACACGACCAACCT-----GAGGGTTTGCTGGGAGGGCCAAGCCGGCGGTCTGGAAGG 6810 ||| || | | ||| ||||||||||||| | || ||||| || || || || || Sbjct 30659 GAAA-ACAAAGACCCTATGAAGAGGGTTTGCTGGAATGGTCAAGCAGGAGGACTAGAGGG 30601 Query 6811 TTTGCGGCAGAAGGGATGGAGCATTTTGAACCTACTGGTGATTCAAAGAGAAGCCAAAAT 6870 || | || || ||||| || || | | | | ||| ||||||||| ||| | Sbjct 30600 GCTGAGACAAAAAGGATGAAGTATCGTTTA--TTATAAACATTAAAAGAGAAGGTAAAGT 30543 Query 6871 CCGGAACACCTCAGTGAAAGTTCTAGCACAGGGAGACAATCAGGTGATCTGTACCCAGTA 6930 || || | | | | | || || ||||| ||||| || ||||||| || || Sbjct 30542 TGAAAATACGAGACTTAGTATCTTGGCGCAAGGAGATAATCAAGTTGTCTGTACTCAATA 30483 Query 6931 CAAA-ACCAGAAACCACAGGGACTCCATCGAGCTCCATAGCGCTTTGCAGGACATCCAAA 6989 ||| ||||| || | | || || || || | | || || | Sbjct 30482 TAAACTGCAGAAGATACGATCAAGCAAT-GAACTAGATGAATGTATCCAAAGAATTATAT 30424 Query 6990 GTAATAACGACGCCATCATGTCTGCCATAGAACGTGGTACCACTAAGTTAGGACTTGTGA 7049 || ||| | || ||| | ||||||| || || | | | ||| | | | Sbjct 30423 CAAACAACAATAAAATAATGAGTAACATAGAAAAAGGAACTAATCGACTCGGATTGTTAA 30364 Query 7050 TCAACCAAGATGAGACCATGCAATCCGCCGATTATTTGAATTATGGGAAGATTCCGATTT 7109 | || |||||||| |||||| | || || ||||||||||||||||||||| ||||||||| Sbjct 30363 TTAATCAAGATGAAACCATGAAGTCAGCGGATTATTTGAATTATGGGAAGGTTCCGATTT 30304 Query 7110 TCCGTGGAACAATTCGTGGACTCGAATTCAAAAGATGGTCTAGAGTGACATGTGTGACCA 7169 | ||||| | | | || | |||| ||||||||||| |||| ||||| || | | Sbjct 30303 TTCGTGGGAAAGTAAAAGGGATGGAATCAAAAAGATGGTC-CGAGTAGCATGTATGTCTA 30245 Query 7170 ATGATCAGCTGCCTAC 7185 | ||||| | ||||| Sbjct 30244 ACGATCAATTACCTAC 30229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35728265173224