Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_025387.1 Length=11492 Score E Sequences producing significant alignments: (Bits) Value seq1802 109 4e-20 >seq1802 Length=132586 Score = 109 bits (120), Expect = 4e-20 Identities = 239/355 (67%), Gaps = 10/355 (3%) Strand=Plus/Minus Query 6638 GGTAGGTTCTTCTCGTTGATGTCATGGGAGCTCAGGGAGTACTTTGTGGTGACTGAGTAT 6697 ||||| || || | | ||||| ||| | | || || || || || | || | ||| Sbjct 31035 GGTAGATTTTTTGCTCTTATGTCCTGGAAATTAAGAGATTATTTCGTAATAAC--AATAT 30978 Query 6698 CTGATCAAGAAGCATTTTGTCCCTTTGTTTAAGGGGTTGGCCATGGCTGATGACCTGACA 6757 |||| || ||||||||| || |||||| ||| ||| | ||||| |||||||| | Sbjct 30977 TTGATTAAAGTGCATTTTGTGCCATTGTTTTCGGGATTGACTATGGCAGATGACCTTAAT 30918 Query 6758 GAGGTGATAAAAAAGATGCTGGACAGTGCATATGGCCAGGGACTGGACGACTACAGTGCA 6817 || |||| |||||| | || | | | |||| || || | || | || || | Sbjct 30917 ACTGTATTAAAGAAGATGTTAGATACTTCGAATGGTCAAGGGTTAGATGGATA---TGAA 30861 Query 6818 GTGTGTA----TTGCCAACCACATTGATTATGAGAAGTGGAACAACCACCAGAGGAAGGA 6873 | | || |||| || || ||| ||||||| ||||||||||| || || || | || Sbjct 30860 -TATATAACAATTGCTAATCATATTAATTATGAAAAGTGGAACAATCATCAAAGAGATGA 30802 Query 6874 GTCCAACAGATATGTATTCAGAGTTATGGGTCAATGTTTGGGGTACCCTAACTTGATTGA 6933 | |||| ||| |||| ||| ||||| |||| ||| ||||| ||||| ||||| Sbjct 30801 AGCGAACAATCCTGTTTTCACAGTCATGGGACAATTTTTAGGGTATCCTAATTTGATCTC 30742 Query 6934 ACGGACTCATGAGTTCTTTGAGAACAGTTTGGTTTATTTGAACATGAGACCAGAT 6988 || || ||||| ||||| | ||||| |||||| |||| ||||| ||| Sbjct 30741 TCGAACCCATGAATTCTTCCAATCGAGTTTAATTTATTACAACAATAGACCTGAT 30687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36656188950784