Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_025394.1 Length=11103 Score E Sequences producing significant alignments: (Bits) Value seq1802 289 2e-74 >seq1802 Length=132586 Score = 289 bits (320), Expect = 2e-74 Identities = 925/1406 (66%), Gaps = 54/1406 (4%) Strand=Plus/Minus Query 5732 TGTTCTTGTTATTTATGGCTCCTTCAGACATTGGGGGCATCCTTTCATTGACTACTTTCA 5791 |||||||||| |||| || || || ||||||||||||||||| || ||||||| | || Sbjct 31606 TGTTCTTGTTGTTTACGGATCATTTAGACATTGGGGGCATCCGTTTCTTGACTATCTACA 31547 Query 5792 GGGACTAAAGAAGCTCCACACTCAAGTGACAATGAAAAAGACAATTGA-CACAGAGTACG 5850 ||||| || ||| | || ||| || | || || || ||||| | ||| || | Sbjct 31546 AGGACTCAAAAAGTTACATGAACAAACAACTTTAAAGAAAACGATTGATCGAAGA-TATG 31488 Query 5851 CGAATGCTTTGGCTAGTGATTTGGCTAGAATTGTACTCACAAAGGAATTCAATGAAAAGA 5910 || | || || || ||||| || || ||||| | | || ||||| | |||||| Sbjct 31487 CGCAGGCATTAGCAAGTGACTTAGCACATATTGTGTTGAAGAATCAATTCGACAAAAAGA 31428 Query 5911 AACGTTGGAGTGTTGATTTTAATAGCGTTC--------CACCGTCCCATTTGTTCTACAA 5962 | |||| ||||| ||| | | |||| || || || || ||| Sbjct 31427 AGATTTGGTCAGTTGAAACCAATCTATTGCGAAAAGATCACCCTCT-ATATGA-CT-CAA 31371 Query 5963 CCATATCAAAGAGAATACATGGCCTACTCCCGCTCTCATACAAGACTTCGGAGATCATTG 6022 | ||||| |||||||||||||||| || || |||||| || ||||| || Sbjct 31370 TTAC-TCAAA----ATACATGGCCTACTCCATTTCAGATCAGAGACTTTGGGGATCAATG 31316 Query 6023 GCATGAATTACCACTTGTTCAGTGTTATGATATTCCGGATCTGATAGATCCTTCTATCAT 6082 |||| | || | |||||| ||| || || ||| |||| |||||| | | || Sbjct 31315 GCATACTCTTCCTTTGAAAAAGTGTTTTGAGATCCCCGATGTGATCGATCCTAGTTTAAT 31256 Query 6083 TTACTCAGACAAAAGTCATTCAATGAACAGGAGATCTG---TGTTGGAGCATGTAAGGAA 6139 || | || ||||| |||||||| || ||| | | | ||||||||||| || Sbjct 31255 CTATGCTGATAAAAGCCATTCAAT---CACTTAATCAGCAATTCTAGAGCATGTAAGAAA 31199 Query 6140 AAATCCAAACACTGTCATCCCCAGCAAAAAAGTATTGCAGACGATGATCG-CATCCCCTG 6198 | |||| || | | ||||| || || ||| | |||| | ||| || ||| | Sbjct 31198 ATATCCGAATATTCCGATCCCGTCAAAGAAGGTACTAGAGACTTTTATCAACAGTCCC-G 31140 Query 6199 CAACAAATTGGATTGAATTCTTGGACATGGTCGATAAAGAAGGATTG---CCGGAAGATG 6255 ||||| | |||| || ||| | |||| || | | || || |||||| || Sbjct 31139 CAACAGAATGGAAAACCTTTTTGAAAGAGGTCAATGATCATGGTTTAGACCCGGAATAT- 31081 Query 6256 ATCTGGTAATTGGACTCAAAGGGAAGGAAAGGGAGTTGAAGATCGCAGGTCGATTCTTTT 6315 || || || ||| | |||||||| | | | || | |||| |||| ||| Sbjct 31080 --CTTGTTATCGGATTACGGGGGAAGGAGCGAAAAATTAAAAGAATAGGTAGATTTTTTG 31023 Query 6316 CGTTAATGTCTTGGAGATTACGGGAATACTTTGTAATTACTGAGTATTTGATTAAAACAC 6375 | | ||||| |||| |||| | || || || ||||| || | |||||||||||| | Sbjct 31022 CTCTTATGTCCTGGAAATTAAGAGATTATTTCGTAATAAC--AATATTTGATTAAAGTGC 30965 Query 6376 ACTTTGTTCCGTTATTTCATGGATTGACTATGGCAGATGATATGACGGCTGTGATCaaaa 6435 | ||||| || || ||| |||||||||||||||||||| | | |||| | || | Sbjct 30964 ATTTTGTGCCATTGTTTTCGGGATTGACTATGGCAGATGACCTTAATACTGTATTAAAGA 30905 Query 6436 aaaTGATGGAGAGTTCATCAGGTCAGGGTCTCAACGATTATTCTTCAATATGTCTGGCTA 6495 | ||| | || | ||| ||||| || | | | ||| | ||| | |||| Sbjct 30904 AGATGTTAGATACTTCGAATGGTCAAGGGTTAGATGGATATGAATATATAACAATTGCTA 30845 Query 6496 ATCACATTGATTATGAGAAATGGAACAATCATCAGAGAAAAGAGTCAAATGGACCTGTTT 6555 |||| ||| ||||||| || |||||||||||||| ||| | || | || ||||||| Sbjct 30844 ATCATATTAATTATGAAAAGTGGAACAATCATCAAAGAGATGAAGCGAACAATCCTGTTT 30785 Query 6556 TCCGTGTCATGGGTCAGTTCTTGGGATTTCCTAACCTTATATCCAGGACTCATGAATTCT 6615 || |||||||| || || || || | |||||| | || || | || |||||||||| Sbjct 30784 TCACAGTCATGGGACAATTTTTAGGGTATCCTAATTTGATCTCTCGAACCCATGAATTCT 30725 Query 6616 TTGAAAAAAGTCTGATATATTACAATGGGAGACCAGATTTGATGAAAGTGCAAGGAAATT 6675 | || ||| | || |||||||| ||||| ||| | |||| ||| || | | Sbjct 30724 TCCAATCGAGTTTAATTTATTACAACAATAGACCTGATCTAATGACAGTTATAGAAGCTC 30665 Query 6676 CATTAGTCAATAACAG---CAAT-CAGCGGGTATGTTGGAACGGACAGGCAGGAGGTTTG 6731 |||| || || || | || || |||| || ||||| || || |||||||| | Sbjct 30664 GTTTAGAAAACAA-AGACCCTATGAAGAGGGTTTGCTGGAATGGTCAAGCAGGAGGACTA 30606 Query 6732 GAGGGCTTGAGGCAAAAGGGATGGAGTAT-TTTGAACCTATTGGTTATCCAGCGAGAATC 6790 ||||| |||| ||||| ||||| ||||| || | || ||| | ||||| Sbjct 30605 GAGGGGCTGAGACAAAAAGGATGAAGTATCGTTTATTATAAACATTA---AAAGAGAAGG 30549 Query 6791 CAAGATCAGAAATACCGCAGTGAAGGTGTTGGCACAGGGTGATAATCAAGTAATCTGTAC 6850 || | |||||| | | | | ||||| || || ||||||||||| ||||||| Sbjct 30548 TAAAGTTGAAAATACGAGACTTAGTATCTTGGCGCAAGGAGATAATCAAGTTGTCTGTAC 30489 Query 6851 TCAATACAAGACAAAACAACAT-CGAACTGACCATGAACTACGATCTGCATTGCTCCA-- 6907 |||||| || || | || || ||| | | |||||||| || || || |||| Sbjct 30488 TCAATATAA-ACTGCAGAAGATACGATCAAGCAATGAACTA-GA--TGAATGTATCCAAA 30433 Query 6908 -AATGAAATTAAATAACGATTTCATCATGGAGGCA-ATTGAACACGGAACTGGAAAATTA 6965 ||| | || ||| ||| || || || ||| | || ||| | |||||| | | Sbjct 30432 GAATTATATCAAACAACAATAAAATAAT-GAGTAACATAGAAAAAGGAACTAATCGACTC 30374 Query 6966 GGACTCTTGATAAACCAGGACGAGACTATGCAATCAGCTGATTATTTGAATTATGGGAAA 7025 ||| | || || || || || || || ||| | ||||| |||||||||||||||||||| Sbjct 30373 GGATTGTTAATTAATCAAGATGAAACCATGAAGTCAGCGGATTATTTGAATTATGGGAAG 30314 Query 7026 GTTCCCATTTTCAGAGGTGTCATTAGAGGGTTAGAAACTAAAAGATGGTCTCGGGTAACA 7085 ||||| ||||| | || | | |||| | ||| | ||||||||||| || ||| || Sbjct 30313 GTTCCGATTTTTCGTGGGAAAGTAAAAGGGATGGAATCAAAAAGATGGTC-CGAGTAGCA 30255 Query 7086 TGTGTGACAAATGATCAGTTGCCTAC 7111 ||| || | || ||||| || ||||| Sbjct 30254 TGTATGTCTAACGATCAATTACCTAC 30229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35411491193988