Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_028234.1 Length=12162 Score E Sequences producing significant alignments: (Bits) Value seq1802 224 8e-55 >seq1802 Length=132586 Score = 224 bits (248), Expect = 8e-55 Identities = 635/948 (67%), Gaps = 52/948 (5%) Strand=Plus/Minus Query 7310 AACACTCCGGCCACTAATTGGAAAGAGTTCTTTGAAGAAGTGGATCAAAATGGATTATCT 7369 |||| ||| || || | |||||| || || |||| || || | |||| ||| Sbjct 31149 AACAGTCCCGCAACAGAATGGAAAACCTTTTTGAAAGAGGTCAATGATCATGGTTTAGAC 31090 Query 7370 GATGAAGATCTCTTGATTGGATTAAAGGCCAAAGAAAGAGAACTGAAAAGGAAAGGTAGA 7429 ||| |||| | || |||||| || || || || || | ||||| | ||||||| Sbjct 31089 CCGGAATATCTTGTTATCGGATTACGGGGGAAGGAGCGAAAAATTAAAAGAATAGGTAGA 31030 Query 7430 tttttttCTCTAATGACTTGGAGATTGAGAGAATACTTTGTTGCAACTGAATTCCTGATT 7489 |||||| |||| ||| | |||| ||| ||||| || || || ||| ||| ||||| Sbjct 31029 TTTTTTGCTCTTATGTCCTGGAAATTAAGAGATTATTTCGTAATAACAATATT--TGATT 30972 Query 7490 AAAAAACATTTTGTCCCTCTATTTGAGGGACTAACTATGGCAGATGATTTGATCACAGTT 7549 ||| |||||||| || | ||| |||| | |||||||||||||| | | || || Sbjct 30971 AAAGTGCATTTTGTGCCATTGTTTTCGGGATTGACTATGGCAGATGACCTTAATACTGTA 30912 Query 7550 GTGaaaaaaaTGATTCGAAACT-CAAATGGACAAGGATTAAATGATTACAGTAGA-ATAA 7607 | || || ||| || || ||| | ||||| ||||| ||| ||| || | | | |||| Sbjct 30911 TTAAAGAAGATG-TTAGATACTTCGAATGGTCAAGGGTTAGATGGATAT-GAATATATAA 30854 Query 7608 CTATAGCAAATCATATTGATTATGAAAAGTGGAATAATCATCAAAGAAAGGAATCAAATA 7667 | || || ||||||||| |||||||||||||||| |||||||||||| | ||| | || | Sbjct 30853 CAATTGCTAATCATATTAATTATGAAAAGTGGAACAATCATCAAAGAGATGAAGCGAACA 30794 Query 7668 AATATGTTTTTAAAGTTATGGGGCAATTCTTAGGTTATCCTAATTTAAT-TGTCAGAACC 7726 | |||||| | ||| ||||| ||||| ||||| ||||||||||| || | || ||||| Sbjct 30793 ATCCTGTTTTCACAGTCATGGGACAATTTTTAGGGTATCCTAATTTGATCTCTC-GAACC 30735 Query 7727 CATGAGTTTTTTGAAAAAAGTGTCATATACTACGCTGGGCGAGCAGACTGGATAGGAGTA 7786 ||||| || || || ||| | || || ||| || | || || ||| Sbjct 30734 CATGAATTCTTCCAATCGAGTTTAATTTATTACAACAATAGACCTGATCTAATGACAGT- 30676 Query 7787 AAGAGAAATGAGTTTATAAATTTAACAGAACAT--AGATCATTT--TGGAATGGACAAAA 7842 | |||| ||||| ||| || | || ||| ||| |||||||| ||| Sbjct 30675 TATAGAAGCTCGTTTAGAAAACAAAGACCCTATGAAGAGGGTTTGCTGGAATGGTCAAGC 30616 Query 7843 AGGAGGACTAGAGGGATTAAGGCAAAAAGGGTG--GTCCACTTTGAATTACTTAGTTATT 7900 ||||||||||||||| | || |||||||| || || ||| |||| || ||| Sbjct 30615 AGGAGGACTAGAGGGGCTGAGACAAAAAGGATGAAGTATCGTTT--ATTA--TAAACATT 30560 Query 7901 GAGAGAGAAAG-CAATTTGAGAAATAC-AGATGTCAAAGTCTTAGCACAAGGAGATAATC 7958 | |||||| | || |||| |||||| ||| | | |||| || ||||||||||||| Sbjct 30559 AAAAGAGAAGGTAAAGTTGA-AAATACGAGA-CTTAGTATCTTGGCGCAAGGAGATAATC 30502 Query 7959 AAACTATCACTACAAACTATGTGTTG-AGAACTTATAGAACAGATCAAGAGCTTCAAAGC 8017 || | || ||| | ||| || ||| ||| ||||||| ||| | Sbjct 30501 AAGTTGTCTGTACTCAATATAAACTGCAGA------AGATACGATCAAG-----CAATG- 30454 Query 8018 CACATAGAAGACATCTGCCAAAATAATAATATAATACTACAGGAAATTA-----TA--AA 8070 | |||| || || | | ||| ||| |||| | || ||| ||| || || | Sbjct 30453 -AACTAGATGA-ATGTATCCAAAGAATTATATCAAACAACAATAAAATAATGAGTAACAT 30396 Query 8071 AGGAACAGGAA--AAT----TGGGTCTTATCATAAATAAAAATGAAACAGTCCAGAGTGC 8124 || || ||||| ||| | || | | || ||| || ||||||| | || || Sbjct 30395 AGAAAAAGGAACTAATCGACTCGGATTGTTAATTAATCAAGATGAAACCATGAAGTCAGC 30336 Query 8125 AGATTATATGAACTATGGGAAAGTTCCCATTTTTCGGGGAATAATCCAAGGATTGAACCC 8184 |||||| |||| |||||||| ||||| |||||||| || | | | |||| || | | Sbjct 30335 GGATTATTTGAATTATGGGAAGGTTCCGATTTTTCGTGGGAAAGTAAAAGGGATGGAATC 30276 Query 8185 CAAAAGATGGTCCAGAGCAAACTTTGTAACTAACGACCAACTACCAAC 8232 |||||||||||| ||| | | | | ||||||| ||| |||| || Sbjct 30275 AAAAAGATGGTCC-GAGTAGCATGTATGTCTAACGATCAATTACCTAC 30229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 38800012850664