Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_028235.1 Length=12994 Score E Sequences producing significant alignments: (Bits) Value seq1802 259 4e-65 >seq1802 Length=132586 Score = 259 bits (286), Expect = 4e-65 Identities = 712/1078 (66%), Gaps = 20/1078 (2%) Strand=Plus/Minus Query 7944 AATACATGGCCTAATCAATATCAGATACAG-GAGTTTGGAGATAGGTGGCATACTTTGCC 8002 ||||||||||||| || || |||||| ||| || ||||| ||| ||||||||| | || Sbjct 31362 AATACATGGCCTACTCCATTTCAGAT-CAGAGACTTTGGGGATCAATGGCATACTCTTCC 31304 Query 8003 TATAACACAAATCTACGAATTACCTGATGTTTTGGATCCCTCATTGATCTATTCAGACAA 8062 | | | | | | || | || ||||| | ||||| || |||||| | || || Sbjct 31303 TTTGAAAAAGTGTTTTGAGATCCCCGATGTGATCGATCCTAGTTTAATCTATGCTGATAA 31244 Query 8063 ATCCCATTCATTAAATAGGAATGAGG--TTATTGAATGGGTACGCCAAAATCCCTACCAA 8120 | ||||||| | | | ||| || || | || ||| | || |||| | Sbjct 31243 AAGCCATTCAATCACTT--AATCAGCAATTCTAGAGCATGTAAGAAAATATCCGAATATT 31186 Query 8121 CCTATTCCAACAAAACGTGTGTTACAAACATTATTAGAAAAACCTGAAACCAATTGGGTA 8180 || || || |||| || || | || || | | | || | ||| | ||| | Sbjct 31185 CCGATCCCGTCAAAGAAGGTACTAGAGACTTTTATCAACAGTCCCGCAACAGAATGGAAA 31126 Query 8181 TCATTTTTACAAAAGATAAATGATGAAGGGTTAGATTTGGATTCTCTAATTATTGGGTTA 8240 | ||||| || || | |||||| | || ||||| ||| | ||| |||| || ||| Sbjct 31125 ACCTTTTTGAAAGAGGTCAATGATCATGGTTTAGACCCGGAATATCTTGTTATCGGATTA 31066 Query 8241 AAAGCCAAAGAAAGAGAAATGAAGAGAATTGGGAGAtttttttCATTAATGTCTTGGGAG 8300 | || || || |||| || ||||| || ||||||||| | | ||||| ||| | Sbjct 31065 CGGGGGAAGGAGCGAAAAATTAAAAGAATAGGTAGATTTTTTGCTCTTATGTCCTGGAAA 31006 Query 8301 TTGAGAGAATATTTTGTATATACAGAGTATTTAATAAAGGAGTATTTTGTTCCATTATTC 8360 || ||||| ||||| ||| ||| | | ||||| || || | | ||||||| ||||| || Sbjct 31005 TTAAGAGATTATTTCGTA-ATA-ACAATATTTGATTAAAGTGCATTTTGTGCCATTGTTT 30948 Query 8361 CATGGCTTGACCATGGCAGATGACCTGCAGGAAGTTATTAAGAAAATGTTGGAGAATGTA 8420 || ||||| |||||||||||||| | || | ||||| ||||| || | | Sbjct 30947 TCGGGATTGACTATGGCAGATGACCTTAATACTGTATTAAAGAAGATGTTAGATACTTCG 30888 Query 8421 AGTGGACAAGGGTTGGATAATTACGAGTATATATCAATTGCGAATCATATTGATTATGAA 8480 | ||| |||||||| ||| || || |||||| ||||||| ||||||||| |||||||| Sbjct 30887 AATGGTCAAGGGTTAGATGGATATGAATATATAACAATTGCTAATCATATTAATTATGAA 30828 Query 8481 AAATGGAACAATCATCAACGATACGAATCTAATTGTCATATTTTTAAAGTTATGGGTCAA 8540 || ||||||||||||||| || | ||| | || || | |||| | ||| ||||| ||| Sbjct 30827 AAGTGGAACAATCATCAAAGAGATGAAGCGAACAATCCTGTTTTCACAGTCATGGGACAA 30768 Query 8541 TGTTTTGGTCTTCCCAATTTGTTTTTACGTTCTCATGAATTTTTTCAAAAAAGCCTGATT 8600 | ||| || ||| |||||| | | || | |||||||| || ||| || | ||| Sbjct 30767 TTTTTAGGGTATCCTAATTTGATCTCTCGAACCCATGAATTCTTCCAATCGAGTTTAATT 30708 Query 8601 TATTACAACCAACGACCTGATCTGATGATCCCCTTAGAAGACAGGCTGGAATCTATTGAT 8660 ||||||||| | |||||||||| |||| |||||| | | ||| | || Sbjct 30707 TATTACAACAATAGACCTGATCTAATGACAGTTATAGAAGCTCGTTTAGAAAACAAAGAC 30648 Query 8661 CCCAGTCAACTTGTTTGTTGGAATGGTCAAGCTGGAGGATTGGAAGGATTGAGGCAAAAG 8720 || | | ||||| |||||||||||||| |||||| | || || |||| ||||| Sbjct 30647 CCTATGAAGAGGGTTTGCTGGAATGGTCAAGCAGGAGGACTAGAGGGGCTGAGACAAAAA 30588 Query 8721 GGTTGGTCAATTGTAAATCTACTTGTTATAGAAAGAGAATCCAAAATTAGGAATACGTTA 8780 || || || || || || | || |||||||| ||| || |||||| | Sbjct 30587 GGATGAAGTATCGTTTAT-TA-TAAACATTAAAAGAGAAGGTAAAGTTGAAAATACGAGA 30530 Query 8781 GTCAAAATTTTGGCTCAAGGAGACAATCAGACCATCAGCACTTGTTATGAGATGGTAAGC 8840 | | || ||||| |||||||| ||||| || | ||| ||| | || | Sbjct 30529 CTTAGTATCTTGGCGCAAGGAGATAATCAAGTTGTCTGTACTCAATATAAACTGCAGAAG 30470 Query 8841 ACTTTTTCAATTGAGGAAGAGGATTTGGAA---ATTAATAAGATTGTTCAAAACAATAAT 8897 | |||| | ||| ||| ||| || | | ||| | |||||| ||| Sbjct 30469 ATACGATCAAGCAATGAACTAGAT---GAATGTATCCAAAGAATTATATCAAACAACAAT 30413 Query 8898 GCTGTCATGAAAGCAATTCGCAATGGGACTGAAAAACTAGGGTTGTTGATTAATGATGAT 8957 | |||| || || || ||| | ||| || ||||| |||||| | ||| Sbjct 30412 AAAATAATGAGTAACATAGAAAAAGGAACTAATCGACTCGGATTGTTAATTAATCAAGAT 30353 Query 8958 GAAACTATG--GTCAGTGCCGATTATTTAAATTATGGGAAAGTTCCTATATTTCGTGG 9013 ||||| ||| |||| || |||||||| ||||||||||| ||||| || |||||||| Sbjct 30352 GAAACCATGAAGTCA--GCGGATTATTTGAATTATGGGAAGGTTCCGATTTTTCGTGG 30297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41462194171112