Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_028236.1 Length=11072 Score E Sequences producing significant alignments: (Bits) Value seq1802 201 8e-48 >seq1802 Length=132586 Score = 201 bits (222), Expect = 8e-48 Identities = 532/799 (67%), Gaps = 25/799 (3%) Strand=Plus/Minus Query 6219 ATCTGATCATCGGATTAAAGGGTAAGGAGAGAGAAGTCAAAGTAAAAGGAAGATTCTTTT 6278 |||| | ||||||||| ||| |||||| || || | ||| || ||| ||||| ||| Sbjct 31082 ATCTTGTTATCGGATTACGGGGGAAGGAGCGAAAAATTAAAAGAATAGGTAGATTTTTTG 31023 Query 6279 CCCTGATGTCTTGGAAGCTGAGAGAGTATTTCGTGGTGACGGAGTACTTGATAAAGGAGC 6338 | || ||||| ||||| | ||||| |||||||| | || | || ||||| || | || Sbjct 31022 CTCTTATGTCCTGGAAATTAAGAGATTATTTCGTAATAAC--AATATTTGATTAAAGTGC 30965 Query 6339 ATTACGTTCCTTTATTTAATGGGCTGACAATGGCTGATGACATGACAACAGTTATATCCA 6398 ||| || || || ||| || |||| ||||| |||||| | | || || || | Sbjct 30964 ATTTTGTGCCATTGTTTTCGGGATTGACTATGGCAGATGACCTTAATACTGTATTAAAGA 30905 Query 6399 AGCTGATGGATAGAACGCAGGGGCAAGGAGGGAG-TGATTATTCTCAAATCTGTATTGCA 6457 || || | |||| || | || ||||| | || || ||| | || ||||| Sbjct 30904 AGATGTTAGATACTTCGAATGGTCAAGG-GTTAGATGGATATGAATATATAACAATTGCT 30846 Query 6458 AATCATATAGATTATGAGAAGTGGAACAATCACCAAAGAAAGGATGCCACTGGTCCAGTT 6517 |||||||| ||||||| |||||||||||||| |||||| | || || | ||| ||| Sbjct 30845 AATCATATTAATTATGAAAAGTGGAACAATCATCAAAGAGATGAAGCGAACAATCCTGTT 30786 Query 6518 TTCAAAGTCATGGGTCAGTTTTTGGGGTATCCCAATTTAATATACCGGACACATGAATTC 6577 |||| ||||||||| || ||||| |||||||| ||||| || | || || ||||||||| Sbjct 30785 TTCACAGTCATGGGACAATTTTTAGGGTATCCTAATTTGATCTCTCGAACCCATGAATTC 30726 Query 6578 TTTGAAAATAGCTGGATATACTACAATGGGAGACCTGACCTGATGACTGTCAGGGATGGA 6637 || || || | || || ||||| |||||||| || |||| ||| || || Sbjct 30725 TTCCAATCGAGTTTAATTTATTACAACAATAGACCTGATCTAATGA----CAGTTATAGA 30670 Query 6638 AGACTGCTT----AACAGCACCCCT---CAAAGAGTGTGTTGGGAGGGACAACTGGGAGG 6690 || | || |||| |||| | || || || ||| | || ||| ||||| Sbjct 30669 AGCTCGTTTAGAAAACAAAGACCCTATGAAGAGGGTTTGCTGGAATGGTCAAGCAGGAGG 30610 Query 6691 ATTGGAGGGTTTAAGACAAAAGGGATGGACAGTTGTTGGTCTCCTAATGATAAGGCGAGA 6750 | | ||||| | |||||||| ||||| | | ||| | | ||| || | |||| Sbjct 30609 ACTAGAGGGGCTGAGACAAAAAGGATGAAGTATCGTT--TATTATAAACATTAAAAGAGA 30552 Query 6751 GGCTAGAATCAGAAACACCGCTGTCAAGATACTAGCACAAGGTGATAATCAAGTGATCTG 6810 | || | | ||| || | | || | || ||||| ||||||||||| |||| Sbjct 30551 AGGTAAAGTTGAAAATACGAGACTTAGTATCTTGGCGCAAGGAGATAATCAAGTTGTCTG 30492 Query 6811 CACTCAGTACAAATTAAGGCCACATGCCAACGATGAA-GAGCT-CAT-AAAGAATCTTCA 6867 ||||| || ||| | | | || | | | | || || || || || | ||| | Sbjct 30491 TACTCAATATAAACTGCAG-AAGATACGATCAAGCAATGAACTAGATGAATGTATCCAAA 30433 Query 6868 GGA-CATCTGGAACAACAACAATGCTATAATGTCTGCCATCAAAAGAGGGACAGACAAGC 6926 | | || | |||||||| || |||||| | ||| ||| ||| || | | Sbjct 30432 GAATTATATCAAACAACAATAA---AATAATGAGTAACATAGAAAAAGGAACTAATCGAC 30376 Query 6927 TCGGATTGATTATAAATGAGGATGAAACTATGCAGTCCGCTGATTACTTAAATTATGGAA 6986 |||||||| | || ||| | |||||||| ||| |||| || ||||| || |||||||| | Sbjct 30375 TCGGATTGTTAATTAATCAAGATGAAACCATGAAGTCAGCGGATTATTTGAATTATGGGA 30316 Query 6987 AAATCCCGGTGTTCCGTGG 7005 | | ||| | || ||||| Sbjct 30315 AGGTTCCGATTTTTCGTGG 30297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35312299341904