Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22]
7,301 sequences; 406,468,287 total letters
Query= NC_028236.1
Length=11072
Score E
Sequences producing significant alignments: (Bits) Value
seq1802 201 8e-48
>seq1802
Length=132586
Score = 201 bits (222), Expect = 8e-48
Identities = 532/799 (67%), Gaps = 25/799 (3%)
Strand=Plus/Minus
Query 6219 ATCTGATCATCGGATTAAAGGGTAAGGAGAGAGAAGTCAAAGTAAAAGGAAGATTCTTTT 6278
|||| | ||||||||| ||| |||||| || || | ||| || ||| ||||| |||
Sbjct 31082 ATCTTGTTATCGGATTACGGGGGAAGGAGCGAAAAATTAAAAGAATAGGTAGATTTTTTG 31023
Query 6279 CCCTGATGTCTTGGAAGCTGAGAGAGTATTTCGTGGTGACGGAGTACTTGATAAAGGAGC 6338
| || ||||| ||||| | ||||| |||||||| | || | || ||||| || | ||
Sbjct 31022 CTCTTATGTCCTGGAAATTAAGAGATTATTTCGTAATAAC--AATATTTGATTAAAGTGC 30965
Query 6339 ATTACGTTCCTTTATTTAATGGGCTGACAATGGCTGATGACATGACAACAGTTATATCCA 6398
||| || || || ||| || |||| ||||| |||||| | | || || || |
Sbjct 30964 ATTTTGTGCCATTGTTTTCGGGATTGACTATGGCAGATGACCTTAATACTGTATTAAAGA 30905
Query 6399 AGCTGATGGATAGAACGCAGGGGCAAGGAGGGAG-TGATTATTCTCAAATCTGTATTGCA 6457
|| || | |||| || | || ||||| | || || ||| | || |||||
Sbjct 30904 AGATGTTAGATACTTCGAATGGTCAAGG-GTTAGATGGATATGAATATATAACAATTGCT 30846
Query 6458 AATCATATAGATTATGAGAAGTGGAACAATCACCAAAGAAAGGATGCCACTGGTCCAGTT 6517
|||||||| ||||||| |||||||||||||| |||||| | || || | ||| |||
Sbjct 30845 AATCATATTAATTATGAAAAGTGGAACAATCATCAAAGAGATGAAGCGAACAATCCTGTT 30786
Query 6518 TTCAAAGTCATGGGTCAGTTTTTGGGGTATCCCAATTTAATATACCGGACACATGAATTC 6577
|||| ||||||||| || ||||| |||||||| ||||| || | || || |||||||||
Sbjct 30785 TTCACAGTCATGGGACAATTTTTAGGGTATCCTAATTTGATCTCTCGAACCCATGAATTC 30726
Query 6578 TTTGAAAATAGCTGGATATACTACAATGGGAGACCTGACCTGATGACTGTCAGGGATGGA 6637
|| || || | || || ||||| |||||||| || |||| ||| || ||
Sbjct 30725 TTCCAATCGAGTTTAATTTATTACAACAATAGACCTGATCTAATGA----CAGTTATAGA 30670
Query 6638 AGACTGCTT----AACAGCACCCCT---CAAAGAGTGTGTTGGGAGGGACAACTGGGAGG 6690
|| | || |||| |||| | || || || ||| | || ||| |||||
Sbjct 30669 AGCTCGTTTAGAAAACAAAGACCCTATGAAGAGGGTTTGCTGGAATGGTCAAGCAGGAGG 30610
Query 6691 ATTGGAGGGTTTAAGACAAAAGGGATGGACAGTTGTTGGTCTCCTAATGATAAGGCGAGA 6750
| | ||||| | |||||||| ||||| | | ||| | | ||| || | ||||
Sbjct 30609 ACTAGAGGGGCTGAGACAAAAAGGATGAAGTATCGTT--TATTATAAACATTAAAAGAGA 30552
Query 6751 GGCTAGAATCAGAAACACCGCTGTCAAGATACTAGCACAAGGTGATAATCAAGTGATCTG 6810
| || | | ||| || | | || | || ||||| ||||||||||| ||||
Sbjct 30551 AGGTAAAGTTGAAAATACGAGACTTAGTATCTTGGCGCAAGGAGATAATCAAGTTGTCTG 30492
Query 6811 CACTCAGTACAAATTAAGGCCACATGCCAACGATGAA-GAGCT-CAT-AAAGAATCTTCA 6867
||||| || ||| | | | || | | | | || || || || || | ||| |
Sbjct 30491 TACTCAATATAAACTGCAG-AAGATACGATCAAGCAATGAACTAGATGAATGTATCCAAA 30433
Query 6868 GGA-CATCTGGAACAACAACAATGCTATAATGTCTGCCATCAAAAGAGGGACAGACAAGC 6926
| | || | |||||||| || |||||| | ||| ||| ||| || | |
Sbjct 30432 GAATTATATCAAACAACAATAA---AATAATGAGTAACATAGAAAAAGGAACTAATCGAC 30376
Query 6927 TCGGATTGATTATAAATGAGGATGAAACTATGCAGTCCGCTGATTACTTAAATTATGGAA 6986
|||||||| | || ||| | |||||||| ||| |||| || ||||| || |||||||| |
Sbjct 30375 TCGGATTGTTAATTAATCAAGATGAAACCATGAAGTCAGCGGATTATTTGAATTATGGGA 30316
Query 6987 AAATCCCGGTGTTCCGTGG 7005
| | ||| | || |||||
Sbjct 30315 AGGTTCCGATTTTTCGTGG 30297
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 35312299341904
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |