Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_028239.1 Length=16133 Score E Sequences producing significant alignments: (Bits) Value seq1802 284 1e-72 >seq1802 Length=132586 Score = 284 bits (314), Expect = 1e-72 Identities = 725/1076 (67%), Gaps = 32/1076 (3%) Strand=Plus/Minus Query 11045 TGGCATCGACTACCGTTGATTAAGTGTTTTGATATACCGGATATGATTGATCCAAGTATA 11104 |||||| || || |||| ||||||||||| || || ||| |||| ||||| ||| || Sbjct 31317 TGGCATACTCTTCCTTTGAAAAAGTGTTTTGAGATCCCCGATGTGATCGATCCTAGTTTA 31258 Query 11105 ATATATAGTGATAAGTCCCATTCAATCAACAGATCAGATGTTCTAAAACACATAAGAGAA 11164 || ||| |||||| ||||||||||| ||||| ||||| | || ||||| || Sbjct 31257 ATCTATGCTGATAAAAGCCATTCAATCACTTAATCAGCAATTCTAGAGCATGTAAGAAAA 31198 Query 11165 AATCCTAATAAGCCAATACCTACAAAAAGAGTGTTAAAAACATTGTTGGAAAAACCAGCG 11224 |||| |||| || || || |||| | || || | || || | | | || || Sbjct 31197 TATCCGAATATTCCGATCCCGTCAAAGAAGGTACTAGAGACTTTTATCAACAGTCCCGCA 31138 Query 11225 ACAGTTTGGCCAGAGTTTTTGAAAAGGGTGAATGATCATGGGCTTGATTGGGAAAGTTTA 11284 |||| ||| | ||||||||| ||| ||||||||||| | || |||| | | Sbjct 31137 ACAGAATGGAAAACCTTTTTGAAAGAGGTCAATGATCATGGTTTAGACCCGGAATATCTT 31078 Query 11285 GTAATTGGTCTTAAGGCTAAAGAGAGGGAA---TTGAAAGATGCTGGGAGGtttttttCA 11341 || || || ||| || ||| ||| ||| || ||||| || || |||||| | Sbjct 31077 GTTATCGGA-TTACGGGGGAAG-GAGCGAAAAATTAAAAGAATA-GGTAGATTTTTTGCT 31021 Query 11342 TTAATGAGCTGGGAGCTGAGGGAGTACTTCGTATTTACTGAATACCTAATTAAAGAGCAT 11401 | ||| |||| | | || || || |||||| | || |||| | ||||||| |||| Sbjct 31020 CTTATGTCCTGGAAATTAAGAGATTATTTCGTAATAAC--AATATTTGATTAAAGTGCAT 30963 Query 11402 TTTGTACCATTATTTAAGGGTCTGACTATGGCTGATGACTTACAAACAGTTATTAAGAAG 11461 ||||| ||||| ||| ||| |||||||||| |||||| | | || || | |||||| Sbjct 30962 TTTGTGCCATTGTTTTCGGGATTGACTATGGCAGATGACCTTAATACTGTATTAAAGAAG 30903 Query 11462 ATGATAGATGTGTCTTCTGGTCAAGGCACTGAGACATATGAGAATATCACCATTGCAAAT 11521 ||| ||||| || ||||||||| || |||||| |||| || ||||| ||| Sbjct 30902 ATGTTAGATACTTCGAATGGTCAAGGGTTAGATGGATATGAATATATAACAATTGCTAAT 30843 Query 11522 AACATAGATTATGAGAAATGGAATAATTATCAAAGGTATGAATCTAATCATGCAATATTC 11581 | || ||||||| || ||||| ||| ||||||| ||||| | || || | | ||| Sbjct 30842 CATATTAATTATGAAAAGTGGAACAATCATCAAAGAGATGAAGCGAACAATCCTGTTTTC 30783 Query 11582 ACAGTGATGGGGCAATTTTTAGGGTATCCAAAGTTAATTGCAAGAACTCATGAGTTTTTT 11641 ||||| ||||| ||||||||||||||||| || || || | |||| ||||| || || Sbjct 30782 ACAGTCATGGGACAATTTTTAGGGTATCCTAATTTGATCTCTCGAACCCATGAATTCTTC 30723 Query 11642 GAGAAAAGCCTAGTTTATTATAACCAAAGACCTGACTTAATGAGAG---TAGTAGGGAAT 11698 | || || ||||||| ||| | |||||||| |||||| || ||| || | Sbjct 30722 CAATCGAGTTTAATTTATTACAACAATAGACCTGATCTAATGACAGTTATAGAAGCTCGT 30663 Query 11699 GAAGTAA--TAAGCTCCAATTCTAGAAAGGTAGCATGGGAAGGTCAGAAAGGTGGACTGG 11756 || || ||| || | | ||| | | || ||| | ||||| ||| ||||| | Sbjct 30662 TTAGAAAACAAAGACCCTA-TGAAGAGGGTTTGC-TGGAATGGTCAAGCAGGAGGACTAG 30605 Query 11757 AGGGATTAAGGCAGAAAGGGTGGAGTGTGGTGAATCTATTAATGATAGAGAGAGAAGTAA 11816 |||| | || || ||||| || ||| | || || || ||| || | ||||||| | Sbjct 30604 AGGGGCTGAGACAAAAAGGATGAAGTATCGTTTAT-TA-TAAACATTAAAAGAGAAGGTA 30547 Query 11817 AAATAAGAAACACGTTAGTTAAGGTCTTAGCCCAGGGTGATAATCAAACAATAACAACAC 11876 || | ||| ||| | ||| |||| || || || ||||||||| | || | Sbjct 30546 AAGTTGAAAATACGAGACTTAGTATCTTGGCGCAAGGAGATAATCAAGTTGTCTGTACTC 30487 Query 11877 ATTATAAA--ACAGAAACATTTCATCAAGAGAATGAA-TTGATGGA-GCATATAAA-AAA 11931 | |||||| ||| || || |||||| |||||| | |||| | | || ||| || Sbjct 30486 AATATAAACTGCAG-AAGATACGATCAAG-CAATGAACTAGATGAATGTATCCAAAGAAT 30429 Query 11932 TATAGTTAGTAATAATAATGCAATCATGGAAAGTATAATAATAGGGACAAGAAAGCTAGG 11991 |||| | | || || ||| ||| ||| | ||| || ||| || | || || Sbjct 30428 TATA-TCA--AACAACAATAAAATAATGAGTAACATAGAAAAAGGAACTAATCGACTCGG 30372 Query 11992 GCTAAGGATAAATGAAGACGAGACAATGCAGTCACCGGATTATATAAACTATGGAAAGGT 12051 | || ||| |||| || || ||| ||||| |||||||| | || ||||| ||||| Sbjct 30371 ATTGTTAATTAATCAAGATGAAACCATGAAGTCAGCGGATTATTTGAATTATGGGAAGGT 30312 Query 12052 GCCGATTGTGAATGG--AGTTATAAGGGGATTAAATACAAAAAGGTGGTCCAGAGT 12105 |||||| | ||| | || || ||||| ||| ||||||| |||||| |||| Sbjct 30311 TCCGATTTTTCGTGGGAAAGTA-AAAGGGATGGAAT-CAAAAAGATGGTCC-GAGT 30259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 51502851874848